LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian2g02880	ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAACCTTCCTGGTGACATCCGTGAAAGAGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCAAGACCCCCTGGTTACGCATTTGTAGAGTTTGAAGATGCTCAAGACGCTGAGGATGCAATACGTGGACGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGACGCTCTGAATATCGGGTTCTAGTCACTGGATTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAGGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTTCGGAATGCATTTTCCAAGGGTTTTGTTCGAGTGAGGGAATATGATTCAAGACGGGATTCATCTAGAAGTCCTAGCCGGGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGAAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCATCACAGCGTTCACCACCTGCTAAATCTCCATCAAGATCTCCTGCTGCCCGGTCTCGTTCAAGATCAAAGTCTCGTTCGTTGTCAGGGTATGAAATGTTTTGA	789	0.4753	MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGFVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSYSRDRSQSKSPKGKSSQRSPPAKSPSRSPAARSRSRSKSRSLSGYEMF	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian2g02880	262	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Vian2g02880	262	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	113	175	IPR000504	GO:0003723
	Vian2g02880	262	CDD	RRM1_SF2_plant_like	8	78	-	-
	Vian2g02880	262	Gene3D	-	2	110	IPR012677	-
	Vian2g02880	262	CDD	RRM2_SF2_plant_like	111	186	-	-
	Vian2g02880	262	MobiDBLite	consensus disorder prediction	186	262	-	-
	Vian2g02880	262	Gene3D	-	111	188	IPR012677	-
	Vian2g02880	262	SUPERFAMILY	RNA-binding domain, RBD	5	175	IPR035979	GO:0003676
	Vian2g02880	262	FunFam	ASF/SF2-like pre-mRNA splicing factor SRP31	1	110	-	-
	Vian2g02880	262	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Vian2g02880	262	MobiDBLite	consensus disorder prediction	226	256	-	-
	Vian2g02880	262	MobiDBLite	consensus disorder prediction	73	108	-	-
	Vian2g02880	262	FunFam	serine/arginine-rich splicing factor SR34A-like	111	188	-	-
	Vian2g02880	262	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	5	253	-	-
	Vian2g02880	262	MobiDBLite	consensus disorder prediction	73	107	-	-
	Vian2g02880	262	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	111	189	IPR000504	GO:0003723
	Vian2g02880	262	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Vian2g02880	262	SMART	rrm1_1	112	185	IPR000504	GO:0003723
	Vian2g02880	262	MobiDBLite	consensus disorder prediction	211	225	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian2g02880	Vian-Chr2	49615516	49618221	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian2g02880	8	195	Eukaryotic Initiation Factors Gene Family	AT4G34110	25.888	5.31e-07	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian2g02880	K12890		-	gmx:100789847	357.066