Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02868 ATGATCATTAAGCGGAGCATGAAAACTGAAATTCCAAAACGATTCAAGTCAGAAAAACGAGGGGAATCGGAGATTCATAAGGAGAGGAGAACAAATGGGGTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTCAAATTCCATGGACTCCAATGGCACAATTCGAGACCTGCCCCCGCAACCAGAAGAAGGGGTTCGTGCCATTCAAGCCCAGTCTTCCAGAGGTCGCACCAAGAAGCTTCCTTGCAGGTTCAGTGATTCTGTTCTTTACGAACGATTAGGGTCTGAAAACGGGAATGGGAATGTTTTACAAGACGTTGCTGCCATGAGTAGTGAGCGGGATTCTCCTTGTTTTCCATGTTCTGCTGTGCTAAGAGATTCCGAGTACTCCGTCAAGACTGTTAGAAAGACGGTTATTGGAGGTCGTTCTGTGTTTGTTAAAGAGAAGATTGATGCTGTGCCTGGACTAAGTACCCACGTTGAACGTGTGAATGGAAGTGTCAAAAGGAAGAGGGATGCTTGCAGATTGGATGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAACGGGAATCGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGGTTCCAGGGGCAGATCAAACTGTACAAAAATAAAGCAAGTGATTTTCACAAGGCAATGGAAGAGGCAATGTTGGCCGAAGATGGCATTTTGGACTTACACTTGGAAGCTGATCAAAATTTGGTGGCTGCGGATTCCCCGGTTGACCACCGTCATTCCTATAAAGATCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGGTGTTGCCATGCAAAACCATAAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGTAAAGTTAATAAAATCGAAACAATATTGTGGGATTTGCAAAAAGATTTGGCATCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTTAATTGTAAATTATCAACATCTCATGCACAGAAGTCAAAAAAGATATCAATGGAGGATAGCCAAAAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGGCCTGGAAGGAATCTATATTCCAAAGTTTCATTTGGTTATGTGCAATTGCGGCTTGTGTAGTTCTAGGAAGTATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATGGATCAGTAACCACAAGACCCCAACGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTGTCCTTCTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGTTGTCATCATTGTTCATGTTATGATGGATCTGAAAAAGTTTCATTTCTAACTTACTGGATGAACCGTCAATTATGTTATGTGCATGTTTATTGTGCAGGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAATAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAA 1905 0.4268 MIIKRSMKTEIPKRFKSEKRGESEIHKERRTNGVFSAEGVSGSSEAPSNSNSMDSNGTIRDLPPQPEEGVRAIQAQSSRGRTKKLPCRFSDSVLYERLGSENGNGNVLQDVAAMSSERDSPCFPCSAVLRDSEYSVKTVRKTVIGGRSVFVKEKIDAVPGLSTHVERVNGSVKRKRDACRLDDFCLGDIVWAKCGKTHPAWPAVVIDPFFRAPKSVINCCVPSALCVMFFGYSKNGNRRDYAWVKQGMIFPFWEFMDRFQGQIKLYKNKASDFHKAMEEAMLAEDGILDLHLEADQNLVAADSPVDHRHSYKDQGTLSCAGCGLVLPCKTIKKIKDSSCAPQHYCKPCVKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSKKISMEDSQKLVLPENIAVVCNGLEGIYIPKFHLVMCNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWISNHKTPTGIPPQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCCHHCSCYDGSEKVSFLTYWMNRQLCYVHVYCAGAKWLSTKNATGQIMFRTLLPGFVEFVKLLMLRESVASAQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02868 634 MobiDBLite consensus disorder prediction 36 59 - -
Vian2g02868 634 ProSiteProfiles PWWP domain profile. 186 255 IPR000313 -
Vian2g02868 634 SUPERFAMILY Tudor/PWWP/MBT 183 285 - -
Vian2g02868 634 SMART PHD_3 357 409 IPR001965 -
Vian2g02868 634 MobiDBLite consensus disorder prediction 1 66 - -
Vian2g02868 634 CDD PHD_TCF19_like 358 408 - -
Vian2g02868 634 Pfam PHD-finger 357 410 IPR019787 -
Vian2g02868 634 ProSiteProfiles Zinc finger PHD-type profile. 355 411 IPR019787 -
Vian2g02868 634 SMART PWWP_4 184 253 IPR000313 -
Vian2g02868 634 MobiDBLite consensus disorder prediction 1 33 - -
Vian2g02868 634 SUPERFAMILY FYVE/PHD zinc finger 354 416 IPR011011 -
Vian2g02868 634 Pfam PWWP domain 187 283 IPR000313 -
Vian2g02868 634 Gene3D - 178 285 - -
Vian2g02868 634 PANTHER PHD FINGER PROTEINS 40 387 - -
Vian2g02868 634 CDD PWWP_AtATX3-like 187 286 - -
Vian2g02868 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 413 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02868 Vian-Chr2 49527760 49532026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02868 321 382 EF-hand Containing Proteins AT5G28340 59.677 2.33e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian2g02868 PWWP 5.7e-15 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02868 - - gmx:100785063 801.201