Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02864 ATGGCTTTTAAGAACTTGTCCCTCCTTACGCTCTGTGTTTCTCTTGTGTTATCCTCCTTGTCACCGATTTCCATAGCTTCTAATAATAAACGTGATGTTGTTCCACCAGAAACCATCTGCAAATCCACCGTATATGCTTCCTACTGCAAAACCCTGCTTGCTAATCAAAACGGCACAATCTTTGACTATGGTCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTAAACCTAGTAAACTCATTCCTCCAAGACAGATCCTCTTTGTCTCTTCCCACAACTCGCGCCCTTGAAGACTGTCAATTCCTCGCTGAACAAAACTTTGAATACTTATCAAACGCACTCGACCATGTTGATAAAGCCAGCGATGATCTTCCCACCACTCAAGCTGAAGACCAGCAAACCATGCTTAGTGCTGCTTTGACAAACCAAGAAACTTGTTTAGAAGGTTTACAGACCACAGCTTCCGATGAAAGAGTGAAGAGTGAACTTCTCTCATCACTCTCTGATGACAAGAAGCTTCACAGTGTTTCCCTTGATTTGTTCATCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACATCATGGCAACCCAATGGAAGACACTTGGGTTTCCGCAACGGTCGTTTACCATTGAGGATGTCTAACCGTGTACGTGCCATCTATGATTCTGCTAGAGGTCACGGCAGAAAACTGCTTCAAGATAGCAGCGACAGTGTACTGGTCAATGATATTGTGGTTGTTAGTCAGGACGGAAGCGGGAACTTCACTACCATCAACGGTGCTATAGCGGCTGCGCCAAATAACTCTGCTGCTAGTGATGGTTACTTTTTAATTTTAGTCACCGGAGGTGTGTACCAAGAGTATGTATCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGAGATGGGATCAACCAAACGATTATCACCGGTGATCACAACGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGGACAAGGATTCGTAGGTGTGAACATAACATTCCGCAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCTCCTTCTATAGCTGTAGTTTTGAAGGGTATCAAGACACTTTATACACCCATTCCCTGAGACAGTTTTATCGAGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAACGCAGCTGTTGTTTTGGAAAACTGCAATATGTATCCCCGCCTTCCGTTGATTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACCGGCATTTCCATACAAAATGCCACTATAAAAGCAGCACAGGATTTGGCTCCAACGGTTGGTACTGTGGAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACTGTTTATATACAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAGTTTCGCTCTCAGCACATTGTACTACGCTGAATATGATAACACGGGTCCTGGTTCAAACACTGCAAACCGAGTAAACTGGTCTGGTTTTCATGTTATCGATGCCACTGATGCAGTCAATTTTACTGTCTCTAGCTTCTTGGATGGAGATGATTGGGTGCCTCGAACCAGCATTCCGTACCAGACATCTTTGTAA 1686 0.4395 MAFKNLSLLTLCVSLVLSSLSPISIASNNKRDVVPPETICKSTVYASYCKTLLANQNGTIFDYGRISVRKSLSQSRKFLNLVNSFLQDRSSLSLPTTRALEDCQFLAEQNFEYLSNALDHVDKASDDLPTTQAEDQQTMLSAALTNQETCLEGLQTTASDERVKSELLSSLSDDKKLHSVSLDLFIKGWVPEKKISTSWQPNGRHLGFRNGRLPLRMSNRVRAIYDSARGHGRKLLQDSSDSVLVNDIVVVSQDGSGNFTTINGAIAAAPNNSAASDGYFLILVTGGVYQEYVSIAKNKKYLMMVGDGINQTIITGDHNVVDNFTTFNSATFAVVGQGFVGVNITFRNTAGPSKHQAVAVRNGADMSSFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLENCNMYPRLPLIGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPTVGTVETYLGRPWKEYSRTVYIQSFMDSLIAPAGWHEWNGSFALSTLYYAEYDNTGPGSNTANRVNWSGFHVIDATDAVNFTVSSFLDGDDWVPRTSIPYQTSL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02864 561 SMART PMEI_2 31 184 IPR006501 GO:0004857
Vian2g02864 561 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Vian2g02864 561 PANTHER PECTINESTERASE 23 553 - -
Vian2g02864 561 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Vian2g02864 561 Gene3D - 247 561 IPR012334 -
Vian2g02864 561 FunFam Pectinesterase 37 187 - -
Vian2g02864 561 FunFam Pectinesterase 242 561 - -
Vian2g02864 561 CDD PMEI-like_3 38 189 - -
Vian2g02864 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Vian2g02864 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Vian2g02864 561 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Vian2g02864 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 185 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02864 Vian-Chr2 49497802 49504447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02864 38 561 Carbohydrate Esterase AT1G02810 58.727 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02864 K01051 - gmx:100786124 909.827