Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02853 ATGTCGCCGCCAATGTCTGCCGACACCCACGCCGCTAATCATATAAATCCCAAGGGCCTCCTCTGCAATGCCGCTGCCGGTGCTTCGGCCGGGGTTATTGCTGCTACATTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCATGGTGTCCCGCAAATCACCAATGGAAGTGTTAGAGGCAGCATAATAGTTGCTAGCTTGGAGCAAATTTTTCGGAAGGAGGGGTTACGTGGAATGTATCGAGGGCTTGCGCCCACTGTGCTGGCTTTACTTCCAAATTGGGCGGTTTATTTTAGTACATATGAGCATCTTAAGAGCCTTCTCCATGGTGATGATGAAAGCCATCATCTTTCAATTGGGTCTAATATGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTCACAAATCCCCTCTGGGTTGTCAAGACTAGACTCCAAACCCAAGGAATGAGATCTGGTGTTGTGCCATACAGGGGCACACTATCCGCATTAAGGAGAATTGCACATGAGGAGGGCATTCGGGGCCTGTACAGTGGACTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATTCAATTTCCTACATACGAGACGATAAAATTTTATCTCGCAAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCCGTTTCCAAAATTTTTGCTTCCACATTAACTTATCCTCATGAGGTCGTACGTTCCAGACTTCAAGAACAAGGGCATCATTCAGAGAAACGGTACTCTGGTGTGATTGACTGTATTAGAAAGGTTTTTCAACAAGAAGGTCTATCGGGTTTTTACCGAGGTTGTGCCACGAACCTTCTGAGGACAACGCCAGCTGCTGTAATCACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCTCTTTTTCCCTCTGATCCACAACCTCATATTTTGTGA 969 0.4582 MSPPMSADTHAANHINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQITNGSVRGSIIVASLEQIFRKEGLRGMYRGLAPTVLALLPNWAVYFSTYEHLKSLLHGDDESHHLSIGSNMIAASGAGAATTMFTNPLWVVKTRLQTQGMRSGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQEGLSGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPQPHIL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02853 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 18 110 IPR018108 -
Vian2g02853 322 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 21 312 IPR044712 GO:0006862|GO:0055085
Vian2g02853 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 208 IPR018108 -
Vian2g02853 322 PRINTS Mitochondrial carrier protein signature 135 153 IPR002067 GO:0055085
Vian2g02853 322 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Vian2g02853 322 PRINTS Mitochondrial carrier protein signature 23 36 IPR002067 GO:0055085
Vian2g02853 322 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Vian2g02853 322 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vian2g02853 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 308 IPR018108 -
Vian2g02853 322 FunFam Mitochondrial nicotinamide adenine dinucleotide transporter 1 117 312 - -
Vian2g02853 322 SUPERFAMILY Mitochondrial carrier 19 304 IPR023395 -
Vian2g02853 322 Gene3D Mitochondrial carrier domain 118 312 IPR023395 -
Vian2g02853 322 Pfam Mitochondrial carrier protein 120 211 IPR018108 -
Vian2g02853 322 Pfam Mitochondrial carrier protein 226 310 IPR018108 -
Vian2g02853 322 Pfam Mitochondrial carrier protein 19 113 IPR018108 -
Vian2g02853 322 Gene3D Mitochondrial carrier domain 5 117 IPR023395 -
Vian2g02853 322 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 6 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02853 Vian-Chr2 49385135 49388670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02853 5 316 Chloroplast and Mitochondria Gene Families AT2G47490 74.359 5.88e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02853 K15115 - gmx:100500213 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02853 2 49385135 49388670 Vian2g02853 2 49385135 49388670 ECH