Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02850 ATGGCGACGAGAAATCGAACAGTGGAGTTTAGGAAGCACAGAGACGCCGTGAAGAGCGTGCGTGCTCCTCTCTCTTCCTCCGCCGCATCTGCTTCTTCCACCGGTCCCGTCATTGAAATGGTTTCGCTTCTTCCTTCCAATCGATCATCCTATGCTCCTTTAAGCACCGATGACCCATCCACCTCTAGGGATGCGGTTACTGTGGGGTTGCCGCCGTCTTGGGTGGATGATTCTGAAGAAATAGCTGCGGCTATACAACGTGCTCGGGTTAAAATTTCTGATTTAACTAAAGCTCATTCGAAGGCTTTGTTGCCTTCCTTTGGGGATGACAAAGAGGACCAGCGTCTTATTGAGACTCTCACCCAGGAAATTACATCTCTTCTTAGAAAATCTGAAGTGAGGCTGAAAAGACTTTCTGCTGCTAGCGGATCTTCTGAGGATTCTAATGTTAGAAAAAACGTACAGCGTTCCCTTGCTATAGACCTTCAGAACCTATCAATGGATCTTCGGCGAAAGCAGTCAGCATACTTGAAACGTCTGCAACAGCAAAAAGAGGGTTTTGACGGGGTTGACTTGGAGATGAACTTTAACGGGAGTAAATTTGGATCACGTGATGATGACTTCAGTGATGTGGGTTTTAGTGAAGAGCAGATGACAAAGCTAAAGAAAAGTGAGCAGTTCTCAGTGGAAAGGGAGAGAGAGATTGAACAGGTTGTTAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTAGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTATAACATTCAGAGTGTTTCTACGTCCGTTGAAGAGGGCCTCAAGCAGTTGCAAAAGGCAGAGAGAACACAGAAAAAAGGAGGGATGATTATGTGTGCAACATCACTTGTTATAATGTGCTTTATCATGCTAGTTCTCTTGATACTCAAAGAGATCCTCTTCTAG 966 0.4482 MATRNRTVEFRKHRDAVKSVRAPLSSSAASASSTGPVIEMVSLLPSNRSSYAPLSTDDPSTSRDAVTVGLPPSWVDDSEEIAAAIQRARVKISDLTKAHSKALLPSFGDDKEDQRLIETLTQEITSLLRKSEVRLKRLSAASGSSEDSNVRKNVQRSLAIDLQNLSMDLRRKQSAYLKRLQQQKEGFDGVDLEMNFNGSKFGSRDDDFSDVGFSEEQMTKLKKSEQFSVEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERTQKKGGMIMCATSLVIMCFIMLVLLILKEILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02850 321 PANTHER SYNTAXIN 77 308 IPR045242 -
Vian2g02850 321 CDD SNARE_syntaxin16 230 286 - -
Vian2g02850 321 ProSitePatterns Syntaxin / epimorphin family signature. 231 270 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian2g02850 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Vian2g02850 321 FunFam Syntaxin-43 71 279 - -
Vian2g02850 321 Gene3D - 71 279 - -
Vian2g02850 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
Vian2g02850 321 Pfam SNARE domain 261 313 IPR000727 -
Vian2g02850 321 SMART tSNARE_6 220 287 IPR000727 -
Vian2g02850 321 SMART SynN_4 65 181 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02850 Vian-Chr2 49358921 49364202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02850 1 310 SNARE and Associated Proteins AT3G05710 68.210 1.14e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02850 K08489 - gmx:100803629 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02850 2 49358921 49364202 Vian2g02850 2 49358921 49364202 ECH
Vian2g02850 2 49358921 49364202 Vian3g01434 3 15714915 15719427 ECH