Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02844 ATGTCTGATAATCACAAGACTCAGAGTTCGGCACCGAAACTGTTTGGTTTCCCACTAACAGAGCAAGAGGAATTTGCAGAAAGGAAATACGATGATGGAGAGGACAGAAAATTCAGGTGCCACTACTGCAACAGAGTTTTCGCAAACTCCCAGGCCTTAGGGGGCCACCAAAACGCTCACAAGAAGGAGCGTCAGAGAGCCAGGCGATTCCAAATCCACAACCACAGACGCTCCTCCATGCCACCACCATCATCATCTCTTTCGGTTACGCCTCTTACCTTTCTCACCTCCCATGCAATAATACGATCGCTGCCACTTTCAGTTACACTGCCACCCATTTACCTTTCATCTCCTTCTCCTTCTACTTCCACCTCTGCAAAGCACTTCCCCTCACGCCCCGTTTTCGTTCCTTCCTCCACCCATCTCACTGCTACTGCTACTGCTACTCCATGTTTTCCTCTTCAGCTTTATGCTTCACCTTCTGTGCTGCAATCTGCTTCTACTGTCCTTGATTTTGCAGCAGACAGGGAAGTTGATGTCCATCTCAAATTGTAG 555 0.4847 MSDNHKTQSSAPKLFGFPLTEQEEFAERKYDDGEDRKFRCHYCNRVFANSQALGGHQNAHKKERQRARRFQIHNHRRSSMPPPSSSLSVTPLTFLTSHAIIRSLPLSVTLPPIYLSSPSPSTSTSAKHFPSRPVFVPSSTHLTATATATPCFPLQLYASPSVLQSASTVLDFAADREVDVHLKL 184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02844 184 SUPERFAMILY beta-beta-alpha zinc fingers 35 65 IPR036236 -
Vian2g02844 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Vian2g02844 184 Pfam C2H2-type zinc finger 38 63 - -
Vian2g02844 184 FunFam Zinc finger protein 6 26 90 - -
Vian2g02844 184 Gene3D Classic Zinc Finger 20 85 - -
Vian2g02844 184 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Vian2g02844 184 PANTHER ZINC FINGER PROTEIN 5 6 184 IPR044299 GO:0010090
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian2g02844 Vian-Chr2 49317026 49317580 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02844 7 72 C2H2 Transcription Factor Family AT1G67030 53.425 9.03e-17 72.8
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02844 zf-C2H2_6 9e-06 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02844 - - gmx:100806818 202.216