Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02840 ATGGCGCATCGAAGAGTCAATCTCTTGTTCCTTCTGTGCGCTCTCTGCTATTCTCTTAGTGCCATTGCTGGGAAGAGCTATTACGATATACTTCAAGTGTCGAAGGGTGCATCGGACGATCAGATAAAGAGGGCGTATCGGAAGCTAGCCTTGAAGTATCATCCTGATAAGAACCCGGGCAATGAAGAAGCGAACAGGAAATTTGCTGAGATTAACAATGCGTATGAAGTGTTGTCGGATAGGGAGAAGAGGGGTATTTATGACAGGTACGGTGAGGAGGGTTTGAAGCAGCATGCTGCTGGTGGAGGTGGAGGTGGTGGAATGAATTTCCAGGATATTTTTAGCACATTGCTGTGTTATGGATGCGTGCATGGTCTAAATTGCGTGCCTGGTTGTAGTTTCTTTGGTGGAGGATCGATGGAGGAAGAAGAGAAAATTGTAAAAGGAGATGACGTGGTTGTTGAATTGGATGCAACACTTGAAGATTTGTACATGGGGGGTACCTTGAAGGTTTGGAGGGAAAAGAATGTACTAAAGTCAGCACCTGGGAAAAGACGATGTAACTGTAGAAATGAGGTTTATCACAAGCAAATTGGGCCTGGGATGTTTCAACAAATGACAGAGCAGGTTTGTGAGCAATGTCCTAATGTCAAATACGTAAGGGAGGGGTATTTCGTCACAGTTGATATTGAGAAAGGCATGCAAGATGGACAGGAGGTGCTGTTTTATGAGGATGGTGAGCCAATAATTGATGGAGAATCTGGAGATTTAAGGTTTCGTATCCGTACTGCACCACATGATCTCTTTAGAAGAGAAGGCAATGACTTGCACACTACTGTCACTATAACTCTGGTTCAAGCCCTTGTTGGTTTTGAGAAGACCATTACACACCTAGATGAGCATCTGGTGAACATAGGCACAAAGGAAATCACAAAACCAAAGCAGGTGAGGAAGTTCAAAGGGGAGGGTATGCCATTGCATATGAACAACAAAAAGGGAGATCTTTACGTCACTTTTGAGGTTCTATTCCCCACGTCACTAACGGAGGATCAGAAATCAAAGATAAAAACAATTCTTGGTTAG 1083 0.4377 MAHRRVNLLFLLCALCYSLSAIAGKSYYDILQVSKGASDDQIKRAYRKLALKYHPDKNPGNEEANRKFAEINNAYEVLSDREKRGIYDRYGEEGLKQHAAGGGGGGGMNFQDIFSTLLCYGCVHGLNCVPGCSFFGGGSMEEEEKIVKGDDVVVELDATLEDLYMGGTLKVWREKNVLKSAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCEQCPNVKYVREGYFVTVDIEKGMQDGQEVLFYEDGEPIIDGESGDLRFRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTITHLDEHLVNIGTKEITKPKQVRKFKGEGMPLHMNNKKGDLYVTFEVLFPTSLTEDQKSKIKTILG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02840 360 PRINTS DnaJ domain signature 83 102 IPR001623 -
Vian2g02840 360 PRINTS DnaJ domain signature 46 61 IPR001623 -
Vian2g02840 360 PRINTS DnaJ domain signature 63 83 IPR001623 -
Vian2g02840 360 PRINTS DnaJ domain signature 28 46 IPR001623 -
Vian2g02840 360 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Vian2g02840 360 SUPERFAMILY Chaperone J-domain 24 127 IPR036869 -
Vian2g02840 360 Gene3D - 140 265 - -
Vian2g02840 360 Coils Coil 61 81 - -
Vian2g02840 360 Gene3D - 266 344 - -
Vian2g02840 360 FunFam DnaJ protein ERDJ3B 23 127 - -
Vian2g02840 360 Pfam DnaJ domain 27 88 IPR001623 -
Vian2g02840 360 SUPERFAMILY HSP40/DnaJ peptide-binding domain 269 353 IPR008971 GO:0006457|GO:0051082
Vian2g02840 360 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Vian2g02840 360 SUPERFAMILY HSP40/DnaJ peptide-binding domain 147 272 IPR008971 GO:0006457|GO:0051082
Vian2g02840 360 CDD DnaJ 27 80 IPR001623 -
Vian2g02840 360 Pfam DnaJ C terminal domain 153 344 IPR002939 -
Vian2g02840 360 Gene3D DnaJ domain 23 125 IPR036869 -
Vian2g02840 360 SMART dnaj_3 25 83 IPR001623 -
Vian2g02840 360 CDD DnaJ_C 150 347 - -
Vian2g02840 360 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 7 359 - -
Vian2g02840 360 FunFam DnaJ subfamily B member 11 265 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02840 Vian-Chr2 49292195 49296633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02840 18 90 C2H2 Transcription Factor Family AT1G74250 41.026 6.01e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02840 K09517 - gmx:100799701 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02840 2 49292195 49296633 Vian2g02840 2 49292195 49296633 ECH