Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02832 ATGACCACTAAGGATCTTGATTTCAATGCAGACATAGGGTTTGTAGTCTCTCCCTTTCTTTTCCCACTCACTGATTTCTTTTCCGATTCGGTTAATTCAATTGTTCTTTCTCCAGCTCTAGCGAAGGAGTTCCTTTCCAATTTCGCAGACGCCAATGGCGAAGCTAAATACCTGAATATCTTGCAAGACGTTGCAAACCACAAAACTAAAGCAGTTCAGATTGACCTTGAAGACTTAATTAACTACAAGGATTTGGACGAAGAATTTCTTAGTCGTGTTACCGAGAATACTCGAAGATATATCGGAATTTTCTCCAATGCAGTTGACGAGCTCATGCCAGAGTCTACTGAGGCTTTTACGGATGATGATCATGATATATTGATGACTCAGAGAACTGATGAAGGAGGGGAAGGTGTTGACGGTTCTGACCCCCTTCAGAAGATGCCTCCTGAAATCAAGCGCTACTACGAGCTTTATATTAAAGCATCTTCGAAAGGACGACCATTTACAATTAGGGAGGTGAAAGCTTCGAACATTGGTCAGCTTGTAAGAATCTCTGGTATTGTGACACGTTGTTCGGATGTCAAACCATTGATGAAAGTGGCTGTATACACGTGCGAGGATTGTGGATTTGAAATTTACCAGGAAGTAACCGCTCGAGTCTTCATGCCCTTGTTTGAATGCCCATCAAAGCGCTGTGATACAAATCGAAGAAAGGGAAATGTTATCCTTCAACTGAGAGCTTCAAAGTTTTTGAGATTTCAGGAGGCCAAAATTCAAGAATTAGCTGAACATGTTCCTAAAGGCCATATTCCACGATCAATGACTGTCCATTTAAGAGGAGAACTCACCAGAAAGGTGGCTCCGGGTGATGTTGTCGAATTATCTGGGATTTTTCTTCCTATACCTTACACTGGTTTTCGAGCAATGCGCGCAGGCTTAGTTGCTGACACTTACTTGGAGGCCATGTCTGTAACTCATTTCAAGAGAAAATATGAAGAATATGAACTTCGAGGAGACGAGGAAGAACAGATTGCGCGATTAGCAGAGGATGGTGACATCTATAATAAATTATCACGATCACTTGCTCCTGAAATTTTTGGACACGATGACATTAAAAAAGCACTGCTTCTTCTCCTTGTTGGTGCTCCACACCGGACCTTGAAGGATGGAATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATGTAGCACCCAGAGGGGTGTATACCACTGGCAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAAAAAGATCCAGTGACAAATGAGATGGTTCTTGAAGGCGGAGCATTGGTGTTAGCAGATATGGGCATATGTGCCATTGATGAATTTGACAAGATGGATGAATCAGATCGTACAGCTATTCACGAAGTTATGGAACAACAGACTGTTAGCATTGCGAAGGCTGGAATCACTACATCTCTGAATGCAAGGACTGCTGTTCTTGCTGCTGCTAATCCAGCATGGGGAAGATATGATCTCAGAAGAACTCCAGCTGAAAATATTAATCTTCCACATGCCCTTCTATCAAGGTTTGATCTTCTGTGGTTAATCCTTGATCGAGCTGATATGGATAATGATCTTGAAATGGCTAGGCATGTTGTATATGTTCACCAAAATAAGGAGTCTCCTGCTCTTGGATTCACTCCTCTTGATCCATCTGTTCTACGTGCATACATATCAGCTGCAAGAAGACTGTCACCAAGTGTCCCCAGGGAACTGGAAGAGTATATCGCTACTGCATACTCCAGCATCCGTCAAGAGGAAGCAAGGTCCAATGCTCCACATTCCTACACTACTGTCAGAACATTACTCAGTATTCTCCGCATATCAGCTGCACTAGCAAGACTCCGTTTTTCAGAAACTGTTGCTCAAAGTGATGTGGACGAAGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTGTACTCTGATGACCGTCAAAAGTCCGGACTTGATGCCATATCTGATATTTATTCCATAGTGCGAGATGAAGCAGCTAGAGCTAACCGAGTGGATGTCAGCTATGCCCATGCACTGAACTGGATATCTAGGAAGGGTTACAGCGAAGCTCAGTTGAAAGAGTGCTTGGAAGAGTATGCAGCACTAAATGTATGGCAGATACATCCTCATACCTTTGACATTAGATTTATTGATGCTTGA 2241 0.4261 MTTKDLDFNADIGFVVSPFLFPLTDFFSDSVNSIVLSPALAKEFLSNFADANGEAKYLNILQDVANHKTKAVQIDLEDLINYKDLDEEFLSRVTENTRRYIGIFSNAVDELMPESTEAFTDDDHDILMTQRTDEGGEGVDGSDPLQKMPPEIKRYYELYIKASSKGRPFTIREVKASNIGQLVRISGIVTRCSDVKPLMKVAVYTCEDCGFEIYQEVTARVFMPLFECPSKRCDTNRRKGNVILQLRASKFLRFQEAKIQELAEHVPKGHIPRSMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSVTHFKRKYEEYELRGDEEEQIARLAEDGDIYNKLSRSLAPEIFGHDDIKKALLLLLVGAPHRTLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPHALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNKESPALGFTPLDPSVLRAYISAARRLSPSVPRELEEYIATAYSSIRQEEARSNAPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSIVRDEAARANRVDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02832 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 676 IPR027417 -
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 148 160 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 204 215 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 221 233 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 186 197 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 313 323 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 Pfam MCM N-terminal domain 42 160 IPR027925 -
Vian2g02832 746 FunFam DNA replication licensing factor MCM7 198 252 - -
Vian2g02832 746 Pfam MCM P-loop domain 342 564 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 Gene3D - 198 252 - -
Vian2g02832 746 ProSiteProfiles MCM family domain profile. 354 560 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 Gene3D - 339 671 IPR027417 -
Vian2g02832 746 SMART AAA_5 396 549 IPR003593 GO:0016887
Vian2g02832 746 ProSitePatterns MCM family signature. 463 471 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vian2g02832 746 Gene3D - 39 129 - -
Vian2g02832 746 SUPERFAMILY Nucleic acid-binding proteins 41 322 IPR012340 -
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein family signature 395 410 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein family signature 483 496 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein family signature 455 469 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein family signature 534 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 PRINTS Mini-chromosome maintenance (MCM) protein family signature 507 519 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 FunFam DNA replication licensing factor MCM7 37 128 - -
Vian2g02832 746 Gene3D - 171 299 IPR012340 -
Vian2g02832 746 FunFam DNA replication licensing factor MCM7 339 671 - -
Vian2g02832 746 SMART mcm 167 666 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 676 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vian2g02832 746 Pfam MCM OB domain 171 301 IPR033762 -
Vian2g02832 746 CDD MCM7 357 664 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vian2g02832 746 Pfam MCM AAA-lid domain 581 664 IPR041562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02832 Vian-Chr2 49212225 49217112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02832 39 744 Core DNA Replication Machinery Family AT4G02060 85.694 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02832 K02210 - gmx:100811639 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02832 2 49212225 49217112 Vian2g02832 2 49212225 49217112 ECH