Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02821 ATGACCCAGTTGCATACTTCCCAAATTAATGGGCTTCCTCGGCTCGGGCACCCGTTTACCCATATCTTTAGGTCCGTCGTCATCCCTTCTTCCTTTAACCAGAAATCGACCACGGTGGTGTCTAAATTCACTGGTTGCAACGACACCGACCTCGACAACATTGACTACGACGACAACAACAACGACGAAGGAAACAAGAACAGCAACGATGACGACGAAATTGACCCTCTCGACGCCTTCATGGAGGGGATTCATGAGGAGATGAAGGCGGCGCCGCCGCCCAAGCCGAAGGAGAAGGCTGAGGACCGGTACCGGGACGACGACGACGATCCCATGGAGAGCTTTTTGAAGGCAAAGAAGGATTTAGGGCTGACTCTCGCGTCCGAGGCGCTGCACGCTGGGTACGATTCTGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGTTTGATCGAGTATGATTCCGACGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGATTACGAACCCTTCAATAAGGATTTTTATGAAGAGACACCTTCAATATCAGGTATGAGTGAGCAGGACGTAAGCGAATACCGGAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCCAAGCCAATAAAGGCTTTCGAGGACTGTGGATTTCCGTCTCAGATTATGAATGCTATAAAAAAACAAGGGTACGAGAAGCCGACATCCATACAATGTCAGGCTTTGCCGGTTGTGCTTTCCGGCAGGGATATTATTGGTATAGCCAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAAGAGGGGCCTATAGGGGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATACCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGTGTATCTGCTGTCTATGGTGGAATGTCAAAGCTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCATTGACGATGACGAGAGCAACTTACCTGGTGCTTGATGAGGCGGATCGGATGTTTGATCTGGGGTTTGAACCTCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGTCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTACTGATCCTATCAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTTGTGTGATTCCTTCTGATACTGAAAAGTTGTCTTGGCTTCTGGAAAAGCTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAGAAGGCCACTGTGGATGAAATAGAATCGCAGTTGGCTCAAATAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTCTCTACCATGTGCTCATTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCGTACACTCTTATAACTCAGAAAGAAGCGCGATTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCCGTGGAGTTGATGGATCTTGCGATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGCGGAGGTGGCCGTGGTGTGCGTGGAGTGGATTTTGGCTTGGGCATTGGATATAATCCCGAATCTAACAACGCACCATCTAACCCAGCTCCTACTCGATCTGCCGCAGTAAATTCTCTGCGGACTGGAATGATGTCACAATTTAGAAACAACTTTGTTGCTGCTTCGTCGAACTCTCAGAATCAAGCATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACGTATCAGCACACTGCTTCACCCAGTCCTGCTTCTTCAGCGGTAAATTCCAGCACTCAAGGTTCTGGAGTAAATTCTGGTCAGAAGAGCATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2310 0.4675 MTQLHTSQINGLPRLGHPFTHIFRSVVIPSSFNQKSTTVVSKFTGCNDTDLDNIDYDDNNNDEGNKNSNDDDEIDPLDAFMEGIHEEMKAAPPPKPKEKAEDRYRDDDDDPMESFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLSWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQIGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNPAPTRSAAVNSLRTGMMSQFRNNFVAASSNSQNQAFGNNTSMAANKRPALPGFVSGGSIGGDVNTYQHTASPSPASSAVNSSTQGSGVNSGQKSMNSSKPKERRRPSGWDR 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02821 769 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 189 605 - -
Vian2g02821 769 Pfam DEAD/DEAH box helicase 249 420 IPR011545 GO:0003676|GO:0005524
Vian2g02821 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 605 IPR001650 -
Vian2g02821 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 225 253 IPR014014 GO:0003724
Vian2g02821 769 FunFam probable ATP-dependent RNA helicase DDX17 187 434 - -
Vian2g02821 769 SMART helicmild6 484 565 IPR001650 -
Vian2g02821 769 CDD DEADc_DDX42 236 432 - -
Vian2g02821 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 377 385 IPR000629 -
Vian2g02821 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 434 IPR027417 -
Vian2g02821 769 Gene3D - 434 609 IPR027417 -
Vian2g02821 769 MobiDBLite consensus disorder prediction 755 769 - -
Vian2g02821 769 MobiDBLite consensus disorder prediction 59 112 - -
Vian2g02821 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 600 IPR027417 -
Vian2g02821 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 431 IPR014001 -
Vian2g02821 769 MobiDBLite consensus disorder prediction 650 664 - -
Vian2g02821 769 MobiDBLite consensus disorder prediction 612 664 - -
Vian2g02821 769 Pfam Helicase conserved C-terminal domain 456 565 IPR001650 -
Vian2g02821 769 Gene3D - 188 433 IPR027417 -
Vian2g02821 769 SMART ultradead3 244 446 IPR014001 -
Vian2g02821 769 CDD SF2_C_DEAD 443 575 - -
Vian2g02821 769 MobiDBLite consensus disorder prediction 50 112 - -
Vian2g02821 769 MobiDBLite consensus disorder prediction 722 754 - -
Vian2g02821 769 MobiDBLite consensus disorder prediction 722 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02821 Vian-Chr2 49124638 49128568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02821 222 575 Eukaryotic Initiation Factors Gene Family AT3G19760 32.493 1.54e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02821 K12835 - gmx:100814854 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02821 2 49124638 49128568 Vian2g02821 2 49124638 49128568 ECH