Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02806 ATGGAGAGGAGTTTATCAGAAAATGGTTCATCAGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACCAAAGGTCCATGGACAGAGGAAGAAGATTCACTTCTCTTCGATTACATCACAGTTCACGGTCTCAAACGAACGGGAAAAAGCTGCAGACTGAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATCACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTGGAACGGATTCAGGCTCAGGCCTCATCATCGGGCCAAGCCCAAACCACCTTAATGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCTCGGCCAGTGACGCGGGTTTTCCGTCAGAGGCCTCTTCTGCGGCTGGTGTCCACGGCCACTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTATTCGTATGGTGCAGAAGAAGGTTATGGCAGGGAATGGGAAGAGAGAAACAATGGGTACTCGGAGATAGCAGGAAGTGGTTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTCTGA 789 0.5044 MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSLLFDYITVHGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTTLMSNVQAHSDPCGGATATASASDAGFPSEASSAAGVHGHSLSDSGASYSLMGGGSWYSYGAEEGYGREWEERNNGYSEIAGSGFGGVDMWTEENICFLQQQLADDF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02806 262 MobiDBLite consensus disorder prediction 168 193 - -
Vian2g02806 262 CDD SANT 70 109 IPR001005 -
Vian2g02806 262 MobiDBLite consensus disorder prediction 168 183 - -
Vian2g02806 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vian2g02806 262 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vian2g02806 262 Pfam Myb-like DNA-binding domain 25 60 IPR001005 -
Vian2g02806 262 SUPERFAMILY Homeodomain-like 22 107 IPR009057 -
Vian2g02806 262 FunFam MYB transcription factor 70 133 - -
Vian2g02806 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 173 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian2g02806 262 Gene3D - 70 111 - -
Vian2g02806 262 Gene3D - 24 65 - -
Vian2g02806 262 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02806 262 ProSiteProfiles Myb-like domain profile. 20 111 IPR001005 -
Vian2g02806 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 60 IPR017930 -
Vian2g02806 262 SMART sant 24 62 IPR001005 -
Vian2g02806 262 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02806 Vian-Chr2 48996310 48997393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02806 1 261 MYB Transcription Factor Family AT2G47190 45.390 9.18e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g02806 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02806 K09422 - gmx:100819467 360.918