Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02805 ATGAAGAAATCACGGTCCGCAGAAGAGGTGAATAGTGAAGACACTAGAAAAGGTCCATGGAGCGTTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGCTGGAATTCCGTCGCACGCTGCCTTAAGAGATCAGGGAAAAGTTGCAGGCTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGCTTAAGCAAGCAAGGAATCTGAAGTGTGACGTGGACAGTGAACAGTTCAAAGATGCATTACGTTACGTGTGGATGCCCCGTTTGATTGAGCGCATTGAACCGTCATCGGAAACTCACCACCCGCCCCCTGTGTCCCTCTTCGAACTTCACCCGAACCCAACTCCTTCGCTCCATCACCAAAACGGGTTACACGGTTCGTGTTCAGGTTCCAATGCCTTGGACTCATCAAGTGCCAAGTTGGAGACTCCTTTAGAGCCTGAAGATATGGGTCATAATAATGTTTCAGTTCCGGGAGTTATCATCTTTGAGTTTCTCCCTCACGCTCTCTCTAAGTTTCATACTCTTCGCTCTTTTTCCCAACACATTCGCAACAGTCCTCACCTCCATCTCCTTCCTCCGTATGTTGTAGATGTGGTTCGTCGAGTGACCAACAATGCATTTCTATGTAGGTGGAAGCACGATTTAGGGATCTGTGGTGGTTTCTCAAACGGTGCTCGCATTACTCAAATAGTGCTTTCATGGCTTGCATATATGAGCCCAGTCGTTCTTGCGAGGTGGGCAAATTTTCATTTCTATAGTGTCACATGCATTCTTGTGGTCACAACAACTTCGATGTTCATTTGTTGTGGAACTGTGTGGTTATACACATATGTTCTGATACGAGGTGGTTATATCGTGGTTCTAGTTCATCGTTGTCGAGTAAAGGTGCCTGGTGTAGAGATTTGCACTTACAATGAATGTTGGTGA 1086 0.4696 MKKSRSAEEVNSEDTRKGPWSVEEDTLLQNYVATHGDGRWNSVARCLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVLKQARNLKCDVDSEQFKDALRYVWMPRLIERIEPSSETHHPPPVSLFELHPNPTPSLHHQNGLHGSCSGSNALDSSSAKLETPLEPEDMGHNNVSVPGVIIFEFLPHALSKFHTLRSFSQHIRNSPHLHLLPPYVVDVVRRVTNNAFLCRWKHDLGICGGFSNGARITQIVLSWLAYMSPVVLARWANFHFYSVTCILVVTTTSMFICCGTVWLYTYVLIRGGYIVVLVHRCRVKVPGVEICTYNECW 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02805 361 FunFam MYB transcription factor 72 135 - -
Vian2g02805 361 MobiDBLite consensus disorder prediction 167 191 - -
Vian2g02805 361 ProSiteProfiles Myb-like domain profile. 12 62 IPR001005 -
Vian2g02805 361 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 153 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vian2g02805 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Vian2g02805 361 Pfam Myb-like DNA-binding domain 17 62 IPR001005 -
Vian2g02805 361 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vian2g02805 361 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian2g02805 361 CDD SANT 19 62 IPR001005 -
Vian2g02805 361 FunFam Myb transcription factor 17 67 - -
Vian2g02805 361 SMART sant 67 115 IPR001005 -
Vian2g02805 361 SMART sant 16 64 IPR001005 -
Vian2g02805 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian2g02805 361 CDD SANT 72 111 IPR001005 -
Vian2g02805 361 MobiDBLite consensus disorder prediction 147 192 - -
Vian2g02805 361 Gene3D - 18 67 - -
Vian2g02805 361 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Vian2g02805 361 Gene3D - 72 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02805 Vian-Chr2 48974134 48976726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02805 14 156 MYB Transcription Factor Family AT1G48000 66.000 6.01e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g02805 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02805 K09422 - gmx:100797220 296.589