Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02769 ATGGGAAAACACTCTAATTCTTCTTCCTCTTCCATCAGCAGTAGCAGCAACCACCACCACCTTCTCATTTCCACTGCATCCTCTCTCACACAAGAGCTTCCCACTGATCTTAGTCTTGGACTCAGCATTTCCGCCGCTCACCATGGTGGTTCTTCTATTTCAAGGGGGCATTGGCAACAACCACAGCACCCTCTTGTGAACATTTCGCAAGCGGCTGAAGCTAATGATTGCAACGACTATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATACTTGCTCATGGAAGCTATTATGAGTTAGTGAAGAGTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACAAGGGTAGACACATTCGGGTGTTAA 528 0.4527 MGKHSNSSSSSISSSSNHHHLLISTASSLTQELPTDLSLGLSISAAHHGGSSISRGHWQQPQHPLVNISQAAEANDCNDYSSFFVKVYMEGIPIGRKLNILAHGSYYELVKSLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02769 175 Gene3D - 76 174 - -
Vian2g02769 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Vian2g02769 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 73 170 IPR003311 GO:0005634|GO:0006355
Vian2g02769 175 Pfam AUX/IAA family 70 169 IPR033389 -
Vian2g02769 175 SUPERFAMILY CAD & PB1 domains 80 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02769 Vian-Chr2 48654137 48655011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02769 50 167 B3 DNA Binding Superfamily AT5G62000 30.000 3.31e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian2g02769 AUX_IAA 1.5e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02769 K14484 - gmx:100783140 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02769 2 48654137 48655011 Vian3g01533 3 16732166 16733243 PCT