Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02768 ATGATTCAGGATATGCCTGACTCCACCCGCTCCGCTATGACAAGAAGCTCCTACTCCTTTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCTCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAATTTGAAAACTTATTAAGACCGGCAAAGGACTCTAAGCCCGTTACCCCAGGACATGGTCTCTTACAACAGTGTTCACCTTCAACTCCTCTCAAGAAACAAAGAACTGATTCAACTCAGACACCACCACCACCACCACCGAACACACGGCACATGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAACATTATTCATATCCAGCGAGAATGGAGGAGATTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCTGGGAATTCACAGACACCAAGGTCAACTGCGTTATGACCAAACCTCAGCCTCAGAAGCACTTAGAGCGAAGGAAAAAGCTTATAATAATAATAACACTGTCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGATGACTCAACATATTTAAGTGATAATGACGAAGAGCCTGAAAATAGGGTAAAGCAAGATAGGGAGGGAAACAGACTCAAGAGAAGCAGAAACACTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCACATTTATCACAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTGTTCCACCACTATCAGCTATCACAGACTCCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCACGCACCTTTCTTCCCCGTCATCGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCGCACCTACACAACATCTTGCTAAATCTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGTCCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG 1581 0.4453 MIQDMPDSTRSAMTRSSYSFYDNDFLELVWENGEVVARGGSSNKSPSIKRTRLNPLYSLEDHLSPLKESDMSSSYQSNAQDSCHSSQNKNSCKLNEEFENLLRPAKDSKPVTPGHGLLQQCSPSTPLKKQRTDSTQTPPPPPPNTRHMGFDQTTAKVNFSNFSIPAVFLKSSTCHGSSTTQQTKHYSYPARMEEIEARKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGLGIHRHQGQLRYDQTSASEALRAKEKAYNNNNTVCKEPFLASSVCSLGASNDPNVGIRKNEDTDDSTYLSDNDEEPENRVKQDREGNRLKRSRNTEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIEYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLSQLVGAGMGFRPPELPVPPLSAITDSRLHQMFGFPNQIPTMPMPHAPFFPVIGNSPTQPHLAATTAPTQHLAKSAASLQVSLPTNLVPLENATNQLQNPVSFHPHGISTPFIFPQK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02768 526 MobiDBLite consensus disorder prediction 286 339 - -
Vian2g02768 526 Pfam Helix-loop-helix DNA-binding domain 333 378 IPR011598 GO:0046983
Vian2g02768 526 MobiDBLite consensus disorder prediction 105 150 - -
Vian2g02768 526 Gene3D - 325 386 IPR036638 GO:0046983
Vian2g02768 526 MobiDBLite consensus disorder prediction 198 232 - -
Vian2g02768 526 MobiDBLite consensus disorder prediction 293 339 - -
Vian2g02768 526 MobiDBLite consensus disorder prediction 67 89 - -
Vian2g02768 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 393 IPR036638 GO:0046983
Vian2g02768 526 PANTHER TRANSCRIPTION FACTOR PIF3 7 486 IPR044273 GO:0003700|GO:0006355
Vian2g02768 526 MobiDBLite consensus disorder prediction 115 134 - -
Vian2g02768 526 MobiDBLite consensus disorder prediction 68 89 - -
Vian2g02768 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Vian2g02768 526 SMART finulus 335 384 IPR011598 GO:0046983
Vian2g02768 526 CDD bHLH_AtPIF_like 329 391 IPR047265 -
Vian2g02768 526 FunFam Basic helix-loop-helix transcription factor 324 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02768 Vian-Chr2 48639492 48641815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02768 284 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 53.279 7.93e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g02768 HLH 4.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02768 K12126 - gmx:100804665 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02768 2 48639492 48641815 Vian3g01531 3 16704035 16705412 PCT