Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02760 ATGGAAAAGTTCATTATGAGTGGTTTCATATTGCTTGTGGTGCTATTCACTACAGAACTTGGACTGGCATCAGCTGCTTGGTTGCGAGCTCATGCAACATTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGAGGAGCATGTGGCTATGGAAATCTCAACACAGATGGTTATGGTATAAAAACAGCTGCTTTGAGCACTGTTTTGTTTAATGACGGAAAATCATGCGGTGGTTGCTATACTATAGTTTGTGACGCAAACCAAGTGCCCCAATGGTGCCTTAGGGGCACTTCCATCACTATCACTGCCACGAATTTCTGTCCCCCAAACTATGCTCTCCCTAATGACAATGGTGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCATTTGAGACAATAGCAAAGTACAAAGCTGGGATTGTGCCAATTTTTTACAGGAGAGTTGGGTGCAAAAGAAGTGGAGGCATCAGATTTAGCATCAACGGGAGAGACTATTTTGAATTGGTGCTTATAAGCAACGTAGGTGGAGGTGGAGAGATTTCTAGAGTTTGGATCAAAGGGTCGAAAATGAACAAGTGGGAAAGCATGACAAGAAATTGGGGTGCTAACTGGCAAAGCCTCAGATATCTGAATGGTCAGAGTTTGTCTTTCAAAGTTCAACTCAGCAATGGGAAGACTCGCACTGCAATCAATGCAGCACCCTCCAATTGGAGATTTGGCCAGTCTTTCATCCCCAATGTTCAGTTTTGA 765 0.4405 MEKFIMSGFILLVVLFTTELGLASAAWLRAHATFYGGSDASGTMGGACGYGNLNTDGYGIKTAALSTVLFNDGKSCGGCYTIVCDANQVPQWCLRGTSITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFETIAKYKAGIVPIFYRRVGCKRSGGIRFSINGRDYFELVLISNVGGGGEISRVWIKGSKMNKWESMTRNWGANWQSLRYLNGQSLSFKVQLSNGKTRTAINAAPSNWRFGQSFIPNVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02760 254 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Vian2g02760 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vian2g02760 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Vian2g02760 254 Gene3D - 160 254 IPR036749 -
Vian2g02760 254 SUPERFAMILY Barwin-like endoglucanases 20 178 IPR036908 -
Vian2g02760 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 160 IPR007112 -
Vian2g02760 254 SMART dpbb_1 62 150 IPR007112 -
Vian2g02760 254 PANTHER EXPANSIN-A15 9 248 IPR002963 GO:0009664
Vian2g02760 254 Gene3D - 17 156 IPR036908 -
Vian2g02760 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Vian2g02760 254 CDD DPBB_EXPA_N 27 155 - -
Vian2g02760 254 Pfam Lytic transglycolase 62 150 IPR009009 -
Vian2g02760 254 FunFam Expansin 17 156 - -
Vian2g02760 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vian2g02760 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02760 Vian-Chr2 48541841 48542802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02760 10 254 Expansin Gene Family AT4G01630 76.327 1.51e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02760 - - gmx:100787396 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02760 2 48541841 48542802 Vian2g02760 2 48541841 48542802 ECH
Vian2g02760 2 48541841 48542802 Vian3g01520 3 16583292 16585487 PCT