Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02750 ATGAATTTTACTAGAGCTTTGACTGCATCGGCATTTAGGCACGTGACAGGATCAAGTTTTGCATCCCCCTTTGCTGCACAATCTATTTATGCATCAGTAAAATGCGTGACAGATTTCATCAACCAATCTCAGGGAGTGGCTGGTTTTGGCAGTGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCTCCTATCTGGGCAAGAAGTGATGAACCATTAGGTGTGAAGACCCCGAAGAGGGTGAAATATGTGAAAAGGGATGGTAGAAACTATCCACCTGTTAAAGCTCCTTATGCCCGTCCTAATGTCTCAGCTAACAATTCAAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAAATCAGTATCTTCTTTGCAGGATATCCTCACGAATGTTGGTGAAAAGGTTGAATCAGAGTTTGAGCTTCTCAGCATGGATGTTGCTGAACTTGCCGCAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCTGCTGACGGTACTGAAATTTTACCTCGTTCTGCAGTTGTAACTGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCCTTGCGTCAAACATCAGTGGCAGCCAGGGAGGCTGGTGGCATAACTCAACATCTAGGTGCTTTTGTTGTGGTCATGCCATCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCGATGCGGGCAAGGGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTCATGCCTCAAACACTTGAAGCTATGTCCCATGCAAAGGCAGCTAATGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGTGCAAATCCTGAAAAAGTTAAACTACAGCTTGCTTCAGAGGGCTTGCTGCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTTGAAGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAGGAAGCCTTACTACTTCAGGCGGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACAAGGGACGTGGTCCATTGGTAACTACTATAGTAAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTTGTCGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGGCAGGGAAGTTAACTCAACGAGCAACGCCTGCTATGCCTGTTGAGATTGAAGGGCTTAGAGGGTTGCCAATGGCTGGTGATGATGTTATTGTCGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAAGAAATATGAGGAGAACAGGCTAAGGGATAAGATGATACAGGACAAACCAACTACTTCAGATGATTCCATGGAGGTTCCAGTGAGGGTTGAAATGCCAGTGATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCTGTCACTGATGCTTTGAAAACTTTAAACAGTGCTCAGGTTTTGGTGAATGTTGTCCATGTTGGCGTCGGGCCACTTTCTCAATCTGATGTGGACTTAGCACAAGCTTGCGGTGCTTGCATTGTTGGATTCAATGTCAAAAGTCCTCCTACTGCTCTAAGTCAGGCAGCAACTCGTGCCAGTATCAAGATAATCCTGCACCGTGTAATTTACCACCTTTTGGAGGACATAGGCAATTTGATAATAGAGAAGGCCCCTGGAACTTCTGAAACCCAGGTGGCTGGACAGGCAGAAGTGCTTAACATATTTGAAATCAAAGGGAGCAAGTCGAAGGGTCCTGATGTGAAGATAGCTGGTTGTCGTGTTATTGATGGTTTTGTGACAAGATCAGCAACCATGAGGCTTCTGAGGAGTGGAGAAGTGGTGTTTGAAGGACATTGTACGTCTCTTAAGCGGGAGAAGCAGGATGTGGATACTGTGAAAAAGGGAAGTGAGTGTGGACTAGTAATTAGCAATTGGTATGATTTCCAAGTTGGAGATGTTATTCAGTGCTTAGAACAAGTTGTAAGGAAGCCCAAGTTCATAAAGTCAGAGAGTGGTGCTGTTCGAATTGAATGTTGA 2121 0.4437 MNFTRALTASAFRHVTGSSFASPFAAQSIYASVKCVTDFINQSQGVAGFGSETKECGIRCFHASSPIWARSDEPLGVKTPKRVKYVKRDGRNYPPVKAPYARPNVSANNSNPDKTIEIFEGMTLVELAKRTGKSVSSLQDILTNVGEKVESEFELLSMDVAELAAMEAGINVKRLHSADGTEILPRSAVVTVMGHVDHGKTSLLDALRQTSVAAREAGGITQHLGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGKLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQKKYEENRLRDKMIQDKPTTSDDSMEVPVRVEMPVIVKADVQGTVQAVTDALKTLNSAQVLVNVVHVGVGPLSQSDVDLAQACGACIVGFNVKSPPTALSQAATRASIKIILHRVIYHLLEDIGNLIIEKAPGTSETQVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGFVTRSATMRLLRSGEVVFEGHCTSLKREKQDVDTVKKGSECGLVISNWYDFQVGDVIQCLEQVVRKPKFIKSESGAVRIEC 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02750 706 Gene3D Translation factors 358 474 - -
Vian2g02750 706 SUPERFAMILY Translation proteins 359 441 IPR009000 -
Vian2g02750 706 Hamap Translation initiation factor IF-2 [infB]. 2 692 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vian2g02750 706 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 185 355 IPR000795 GO:0003924|GO:0005525
Vian2g02750 706 Pfam Elongation factor Tu GTP binding domain 190 346 IPR000795 GO:0003924|GO:0005525
Vian2g02750 706 NCBIfam translation initiation factor IF-2 113 689 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vian2g02750 706 Pfam Translation-initiation factor 2 484 577 IPR023115 -
Vian2g02750 706 NCBIfam small GTP-binding protein domain 188 340 IPR005225 GO:0005525
Vian2g02750 706 Gene3D Translation factors 589 691 - -
Vian2g02750 706 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 486 594 IPR036925 -
Vian2g02750 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 355 IPR027417 -
Vian2g02750 706 Gene3D - 183 357 IPR027417 -
Vian2g02750 706 FunFam Translation initiation factor IF-2 483 589 - -
Vian2g02750 706 CDD IF2_mtIF2_II 361 456 IPR044145 -
Vian2g02750 706 CDD mtIF2_IVc 595 684 - -
Vian2g02750 706 FunFam Translation initiation factor IF-2 182 357 - -
Vian2g02750 706 Gene3D - 483 587 IPR036925 -
Vian2g02750 706 SUPERFAMILY Translation proteins 590 691 IPR009000 -
Vian2g02750 706 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 104 700 IPR015760 -
Vian2g02750 706 FunFam Translation initiation factor IF-2 590 693 - -
Vian2g02750 706 CDD IF2_eIF5B 189 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02750 Vian-Chr2 48435927 48440356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02750 186 575 Eukaryotic Initiation Factors Gene Family AT1G21160 27.451 1.70e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02750 K02519 - gmx:100781314 1222.99