Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02748 ATGTCCTCCTCAAGGCCTAGTCAATCGTCCAGCAATAATTCTGGCAGATCAAGATCATCAAGACGCAGTGCTAGGGTTCTTGCTCAGACAACTTTAGACGCAAAACTGCGTGCAACTTTCGAGGAATCCGGTAGTTCTTTTAACTACTCCAATTCAGTGAGATTGTCCCCTGGCACAGGCACTGCCAGTGGTGATCATCAACCGAGGTCTGATGAAGTAACAACTGCTTACCTCCATCAGTTACAGAAAAGCAAGCTTATCCAACCATTTGGGTGCTTGCTAGCGTTAGATGAGAAAACATTTAGGGTCATTGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGCCATGCTGTCCCCAGTGTTGGTGACCACCCTGCTCTGGGAATTGGCACTGACATCAGAACTATTTTCACTTCCCCGAGTTCTACTTCTATTCAGAAGGCACTGGGATTTGGGGAGGTTTCACTTCTTAACCCCATTCTAGTTCATTGCAAGTCCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTTACCGGCAGTGTGATCATTGATTTTGAGCCAGTCAAGCCTCATGAAGTTCCCATGACTGCAGCAGGTGCCCTGCAGTCCTATAAATTTGCAGCAAAAGCAATAACTAGATTGCAATCGTTGCCTAGTGGGAACATGGACACTCTGTGTGACACAATGGTTCGAGAGGTTTTTGAACTAACAGGTTATGATAGAGTGATGGCTTATAAATTTCATGAGGATGATCACGGGGAAGTGATTGCTGAAGTGAAAAGGCCAGACCTAGAGCCGTATCTGGGATTGCACTACCCAGCAACTGATATTCCTCAGGCTACACGTTTTTTGTTTATGAAGAACAAGGTGCGTATGATAGTTGATTGTCGTGCAAAGCATGTGAAGGTGCTTCAAGACAAAAAAATTCCATTTGAATTAACTCTGTGTGGATCAACCTTGAGGGCTGCTCACAGTTGTCACTTGCAATACATGCAAAATATGAATTCTAGTGCTTCCTTGGTTATGGCCGTTGTGGTCAATGACAATGATGAAGATGGGGATAGTTCTGATGCTGTTCAGCCACAGAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATCACTCCACTCCCAGGTTTGTTCCTTTCCCTCTCAGGTATGCTTGCGAATTCCTGGCTCAGGTATTTGCCATCCATGTGAACAAAGAACTTGAGATAGAGTATCAGATTATTGAGAAGAATATCCTGAGGACTCAAACACTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGTATTGTATCACAGAGTCCTAACATTATGGACCTTGTTAAGTGCGATGGTGCAGCACTGTTGTATAAAAACAAGGTATGGAGATTAGGGGTAACACCAAGTGAATCCCAGGTAAGAGAGATAGCTTTGTGGCTCTCTGAATGTCACAGGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGCTTCCCAGGGACTGCTACTCTTGGTGATATAACTTGTGGAATGGCAGCTGTCAGAATATCTTCCAAAGATATAGTTTTCTGGTTCCGATCTCACACAGCCGCAGAAATTCGATGGGGTGGTGCAAAGCATGAGCCTGGTGAAAGGGATGATGGTAGCAGGATGCATCCAAGATCTTCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGTTTGCCCTGGAAGGATTATGAAATGGACGTCATTCATTCATTGCAACTAATACTGAGAAATGCATTCAAAGACAACGAGAGTATGGAGATAAGCACATATGCTATCAATACAAGATTAGACGATTTGAAAATTGAAGGGATGCAAGAACTGGAAGCAGTGACTAGTGAGATGGTAAGGTTAATTGAAACAGCAACAGTACCAATTTTGGCTGTTGATGTCAATGGAATGGTCAACGGGTGGAATACAAAAATTGCTGAGTTGACATGA 1980 0.4384 MSSSRPSQSSSNNSGRSRSSRRSARVLAQTTLDAKLRATFEESGSSFNYSNSVRLSPGTGTASGDHQPRSDEVTTAYLHQLQKSKLIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTSPSSTSIQKALGFGEVSLLNPILVHCKSSGKPFYAIIHRVTGSVIIDFEPVKPHEVPMTAAGALQSYKFAAKAITRLQSLPSGNMDTLCDTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPDLEPYLGLHYPATDIPQATRFLFMKNKVRMIVDCRAKHVKVLQDKKIPFELTLCGSTLRAAHSCHLQYMQNMNSSASLVMAVVVNDNDEDGDSSDAVQPQKRKRLWGLVVCHHSTPRFVPFPLRYACEFLAQVFAIHVNKELEIEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESQVREIALWLSECHRDSTGLSTDSLSDAGFPGTATLGDITCGMAAVRISSKDIVFWFRSHTAAEIRWGGAKHEPGERDDGSRMHPRSSFKAFLEVVKTRSLPWKDYEMDVIHSLQLILRNAFKDNESMEISTYAINTRLDDLKIEGMQELEAVTSEMVRLIETATVPILAVDVNGMVNGWNTKIAELT 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02748 659 SMART gaf_1 225 418 IPR003018 GO:0005515
Vian2g02748 659 SUPERFAMILY GAF domain-like 205 405 - -
Vian2g02748 659 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 194 IPR035965 -
Vian2g02748 659 FunFam Phytochrome 413 544 - -
Vian2g02748 659 Gene3D PAS domain 81 328 - -
Vian2g02748 659 ProSiteProfiles PAS repeat profile. 624 659 IPR000014 -
Vian2g02748 659 Pfam GAF domain 225 408 IPR003018 GO:0005515
Vian2g02748 659 Gene3D - 413 586 IPR043150 -
Vian2g02748 659 MobiDBLite consensus disorder prediction 1 26 - -
Vian2g02748 659 Pfam PAS fold 76 192 IPR013654 GO:0006355
Vian2g02748 659 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 225 398 IPR016132 -
Vian2g02748 659 Coils Coil 405 425 - -
Vian2g02748 659 MobiDBLite consensus disorder prediction 49 69 - -
Vian2g02748 659 PRINTS Phytochrome signature 627 643 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 646 659 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 240 259 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 325 346 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 556 574 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 140 162 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 438 458 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 PRINTS Phytochrome signature 523 542 IPR001294 GO:0006355|GO:0009584
Vian2g02748 659 Pfam PAS fold 627 659 IPR013767 GO:0006355
Vian2g02748 659 PANTHER TWO-COMPONENT HISTIDINE KINASE 39 655 - -
Vian2g02748 659 Pfam Phytochrome region 421 596 IPR013515 GO:0006355|GO:0009584
Vian2g02748 659 Gene3D - 206 569 IPR029016 -
Vian2g02748 659 SUPERFAMILY GAF domain-like 416 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02748 Vian-Chr2 48421817 48423796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02748 1 659 Histidine Kinase Gene Family AT1G09570 79.394 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02748 K12120 - gmx:100791098 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02748 2 48421817 48423796 Vian2g02748 2 48421817 48423796 ECH