Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02744 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCTGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTGGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATTAATTACCTTAGGCCAGATTTGAAGAGAGGGGCGTTCTCACAGCAGGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATCGCTGCCCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTCTGAGGTTGAGAATGACAAGGACAAGCCTCTCACGGCTGACAGAAGCAATCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCAAAACAAAAGCCCATAACTTGTACTACTTCCATGCCAATGGATAGATATCCCCTTGAAGTTTCTGCTACCTCAAAGATCAGCAGTGGTGGCAACAACAGCAGCAGCACCCTAGACAGGTTTGGCACTTGTCATGACAACAACAGCTCCATGGCTAGTTCTGATATGATGGGAATGGGATACTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACTGCAAACCCCAACAACACCCCACTTTGTTTCATTCCTGGTTCCACATCTTCCCAAATGATGTCAGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACACATGTAAAGCCCACTGTCAGCCTCCAGTCTAATAACAACAACCCATCTTCCATATTTTCTGACGGGGTTCAGAACTGGGAAGGAAGTGCCTTCAGCAATAATAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATGGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGACAGATAATAAAGATGCTAATTCTTCTCATGTGGTACCCTTGCAATCAGAAGCAGAAGACATCAAATGGTCCGAGTATCTGAACAACACCCCTTTTTACCTGGGAAGCACAGTGCAGCAGCATCAAACCACTCACTCTCTCTACAGTGACGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCACTTTCAACCCTCGGATATATATAGCAAAGATCTCCAGAGATTTTCAGTAGCCTTTGGACAATCCCTGTAG 1320 0.4667 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENDKDKPLTADRSNQKASNEVSVVEPPKQKPITCTTSMPMDRYPLEVSATSKISSGGNNSSSTLDRFGTCHDNNSSMASSDMMGMGYFPFQHLNYGPNMGLTTANPNNTPLCFIPGSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSIFSDGVQNWEGSAFSNNNNNNNASKSNGSSSCSIQLQSSTNFLDHGTITWGLQAESATKTDNKDANSSHVVPLQSEAEDIKWSEYLNNTPFYLGSTVQQHQTTHSLYSDEVKPETAFIADESSTSWHHSQHFQPSDIYSKDLQRFSVAFGQSL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02744 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vian2g02744 439 SMART sant 66 114 IPR001005 -
Vian2g02744 439 SMART sant 13 63 IPR001005 -
Vian2g02744 439 FunFam MYB transcription factor 68 140 - -
Vian2g02744 439 MobiDBLite consensus disorder prediction 129 143 - -
Vian2g02744 439 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian2g02744 439 CDD SANT 17 61 IPR001005 -
Vian2g02744 439 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vian2g02744 439 PANTHER MYB DOMAIN PROTEIN 55 1 339 - -
Vian2g02744 439 FunFam Myb transcription factor 11 67 - -
Vian2g02744 439 MobiDBLite consensus disorder prediction 119 170 - -
Vian2g02744 439 Gene3D - 68 147 - -
Vian2g02744 439 CDD SANT 69 109 IPR001005 -
Vian2g02744 439 Gene3D - 11 67 - -
Vian2g02744 439 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian2g02744 439 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vian2g02744 439 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian2g02744 439 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02744 Vian-Chr2 48380237 48381857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02744 1 439 MYB Transcription Factor Family AT1G09540 48.678 7.84e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g02744 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02744 K09422 - gmx:100788976 711.064