Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02742 ATGGCCGATGGCAGCACAGCTACCTGCTTCGATATCCTCATTTCCATCATCCTCCCTCCTCTTGGAGTTTTTCTCAAGTATGGCTGCAAGTTAGAGTTCTGGATCTGTTTGCTGCTCACCATTCTCGGCTACATTCCTGGAATTATCTATGCTGTCTATGCCATCACCAAGTGA 174 0.4713 MADGSTATCFDILISIILPPLGVFLKYGCKLEFWICLLLTILGYIPGIIYAVYAITK 57
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02742 57 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 6 57 IPR000612 GO:0016020
Vian2g02742 57 Pfam Proteolipid membrane potential modulator 9 55 IPR000612 GO:0016020
Vian2g02742 57 ProSitePatterns Uncharacterized protein family UPF0057 signature. 13 28 IPR000612 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02742 Vian-Chr2 48356948 48357226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02742 5 57 RCI2 Gene Family AT3G05880 73.585 2.03e-24 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02742 - - vra:106757363 114.005