Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02740 ATGGACTATCGATGGACTAATGGTAGGCTGGATACAGGTGGCCGTGACAGGAGGCAATCTAAAAGGGAACAGGCATATCAGGACTCTCTTGTTGAGGATTTGTCAGAAGACTTCCGCTTGCCAATCAACCACAGGCCAACAGAAAATGTTGATCTGGACAACGTAGAGCAAGCATCTCTGGACACACACTTAACATCATCTAATATTGGCTTTAAGCTTCTCCAAAAGATGGGATGGAAAGGAAAGGGTCTTGGGAAGGATGAACAAGGAATCACCGAGCCAATTAAATCTGGGATTAGAGATCCAAGACTTGGAGTTGGTAAGCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGAGAAAAAAACTTGATGTTGAATTGGAGGAGACAGAAGAACATGTGAAGAAGCGGGAGAAGGCTGCATATAGCATATATGCATGTCTTTTGACCGGATTGGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGAAAGAAATCCGAAAGGTGTTTTATTGTGATCTCTGCAACAAGCAATACAAATTAGCTATGGAATTTGAAGCACACTTGAGCTCTTATGATCACAATCACAGAAAGCGATTCAAACAAATGAAGGAAATGCATGGTGGTGGTAGTCGAGATGATAGGCAAAAGCGAGAACAACAGCGTCAAGAGAAAGAAATGGCAAAGTTTGCTCAAATTGCTGATGCTCAAAAGCAGCAACGCCTTCAATTGCAACAAGATTCTGGATCAGGAACAGTGTCCTCCGAATCTAGAACTGCTACTGCTCTTACAGATCAGGAGCAGAGAAATACTTTGAAATTTGGGTTTTCGTCTAAAGGCAGTGGTTCCAAGATAACTTTTGGTGCCAAGAAACAAAATGTTGCGAAGAAGCAAAGTGCCCCCCCGATCTCCTCTATATTTAGTAATGATAGCGATGAAGAATAA 960 0.4156 MDYRWTNGRLDTGGRDRRQSKREQAYQDSLVEDLSEDFRLPINHRPTENVDLDNVEQASLDTHLTSSNIGFKLLQKMGWKGKGLGKDEQGITEPIKSGIRDPRLGVGKQEEDDFFTAEENIQRKKLDVELEETEEHVKKREKAAYSIYACLLTGLVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKQMKEMHGGGSRDDRQKREQQRQEKEMAKFAQIADAQKQQRLQLQQDSGSGTVSSESRTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQSAPPISSIFSNDSDEE 319
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02740 319 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 319 - -
Vian2g02740 319 ProSiteProfiles G-patch domain profile. 66 111 IPR000467 GO:0003676
Vian2g02740 319 ProSitePatterns Zinc finger C2H2 type domain signature. 177 199 IPR013087 -
Vian2g02740 319 Pfam Zinc-finger double-stranded RNA-binding 175 202 IPR022755 -
Vian2g02740 319 MobiDBLite consensus disorder prediction 296 319 - -
Vian2g02740 319 MobiDBLite consensus disorder prediction 1 24 - -
Vian2g02740 319 Coils Coil 123 143 - -
Vian2g02740 319 Coils Coil 313 319 - -
Vian2g02740 319 MobiDBLite consensus disorder prediction 209 236 - -
Vian2g02740 319 MobiDBLite consensus disorder prediction 9 24 - -
Vian2g02740 319 Pfam G-patch domain 67 107 IPR000467 GO:0003676
Vian2g02740 319 SMART G-patch_5 64 109 IPR000467 GO:0003676
Vian2g02740 319 SUPERFAMILY beta-beta-alpha zinc fingers 173 209 IPR036236 -
Vian2g02740 319 MobiDBLite consensus disorder prediction 241 271 - -
Vian2g02740 319 MobiDBLite consensus disorder prediction 209 271 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian2g02740 Vian-Chr2 48334425 48337258 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02740 1 319 C2H2 Transcription Factor Family AT5G26610 60.000 5.58e-118 340
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02740 - - gmx:100793206 523.087
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02740 2 48334425 48337258 Vian2g02740 2 48334425 48337258 ECH