Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g02699 | ATGCGATTCGTTTCGGTATTAGTACGATTGGTAATGATGGATCTGAAGGAATGGTCTTCTCCAGAGCTCAACGAGAGCAAGAAATGCTGCTCCGATTGCAAAACCACCAAGACTCCTCTGTGGAGAGGAGGACCAGCTGGACCTAAGACTCTGTGCAACGCCTGCGGAATCAGGTACCGGAAGAGAGGGAGTTGTTCGAGGAAGAGAGAGGAGGTGGTGGTGTTGCACCGGACATCCTCTGTTGTGAAGAAACAGAGGTGGAAGATGTTGGGAGAAGAGGAACAGGCGGCTGTGTGTTTGATGGCCCTGTCCTGTGGTTTTTTTACCATTCCTTCACTTACCGCATTCCAGGTAACCTAA | 360 | 0.5028 | MRFVSVLVRLVMMDLKEWSSPELNESKKCCSDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGSCSRKREEVVVLHRTSSVVKKQRWKMLGEEEQAAVCLMALSCGFFTIPSLTAFQVT | 119 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g02699 | 119 | CDD | ZnF_GATA | 30 | 65 | IPR000679 | GO:0006355|GO:0043565 | |
Vian2g02699 | 119 | ProSitePatterns | GATA-type zinc finger domain. | 30 | 55 | IPR000679 | GO:0006355|GO:0043565 | |
Vian2g02699 | 119 | PANTHER | OS01G0976800 PROTEIN | 19 | 63 | - | - | |
Vian2g02699 | 119 | ProSiteProfiles | GATA-type zinc finger domain profile. | 24 | 63 | IPR000679 | GO:0006355|GO:0043565 | |
Vian2g02699 | 119 | SMART | GATA_3 | 24 | 75 | IPR000679 | GO:0006355|GO:0043565 | |
Vian2g02699 | 119 | Gene3D | - | 24 | 91 | IPR013088 | GO:0006355|GO:0008270 | |
Vian2g02699 | 119 | Pfam | GATA zinc finger | 30 | 64 | IPR000679 | GO:0006355|GO:0043565 | |
Vian2g02699 | 119 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 26 | 64 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g02699 | Vian-Chr2 | 47895327 | 47895865 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g02699 | 14 | 106 | C2C2-Gata Transcription Factor Family | AT5G49300 | 49.565 | 4.86e-28 | 98.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-GATA | Vian2g02699 | GATA | 4.9e-17 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g02699 | - | - | vra:106757446 | 243.047 |