Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02696 ATGACTTCTTTGAGCCGAGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAGGAGAAGTTCAAGGAGTCGGTGCACAGGCTCGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAAAAGTACTTAAGAGGGTTTACTAAAGTTGACGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTTGAAGCACTTGATAGGCAAGACAAGGCAGAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTTTTCTCCACGTTCAATGAGGAACTATACAAAGAAATCACCCAACTTTTAACTCTAAGTAATTTCAGGGAGAATGAACAGTTGTCCAAGTATGGTGACACCAAAAATGCTCGAGGGATCATGTTGATAGAGTTAAAAAAGCTAATAGAGGCAAATCCTCTTTTCCGTGACAAACTTATCTTCCCTACCCTTAGGTCATCTAGATTGCGGACGTTGATCAATCAAAGTTTAAACTGGCAGCACCAACTTTGCAAAAACCCTAGGCCAAACCCAGATATAAAGACTTTATTCACCGACCACACATGTACACCTCCTAATGGTCCTCTAGCCCCTACTCCTGTCAATCTTCCAATTGCTGCCGTTGCAAAGCCTTCAGCTTATACTTCAATTGGAGCTCATGGTCCCTTTCCCCCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGGTGGTTGGATGGCTAATGCCTCTGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATGCCTGTCCCACAGAATCAAGTGTCTATCATGAAGCATCCAAGAACACCTCCAACAACTCCTGGCATGGTTGACTATCAGAATGCTGATCATGAGCAGTTAATGAAAAGACTCCGACCTGCTCCTTCTCTGGAGGAGGTTTCCTATCCTGCCTCTCGACAACCCTCTTGGTCGCTGGATGATCTACCAAGAACAGTGGCAATGACATTGCATCAAGGATACTCTGTGACAAGCATGGACTTTCATCCTTCACATCAAACCTTACTTCTTGTTGGTTCTACTAATGGGGAAATTACACTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCACAAAGCCATTCAAGATATGGGATATCTCAGCGTGCTCATTACCATTTCAGGCAGCTATGGCCAAAGATGTTTCCATTTCTGTCAGTCGTGTCACATGGAGCTTGGATGGAAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATTCCTACATTGGATCAAATGAGCTGGTTCAGCGTGTGGAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTGTGGGATTTGACTGGACGGAGACTATTTAACTTTGAGGGTCATGAGGCGCCTGTATATTCTATCTGCCCTCATCACAAGGAGAACATTCAGTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTGTATGATAATGCGGGCTCTAGGGTTGACTATGATGCCCCAGGCCATTGGTGTACCACGTTGCTCTATAGTGCTGATGGAAGTAGACTGTTTTCCTGTGGGACTAGTAAAGACGGCGAGTCATTTCTTGTTGAATGGAATGAAAGTGAAGGAGCTATTAGGAGAACATACAATGGATTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGGCACAACCCAAAATCGCTTCTTGGCTGCTGGTGAAGATGGCCAAATCAAATTTTGGGAGATGGACAGTATTAATCTTCTAACAACCACTGATGCAGAGGGTGGATTACAGGCCCTTCCACTCTTGAGATTCAACAAGGAAGGAAGTCTTCTTGCTGTCACCACTGCAGACAATGGATTCAAAATTCTTGCTAATGTAAGTGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTCACCCATCGACTCTGCTGCAATCAAGGCATCTGGCTCTTCTGCTGTTAATGTTAGTACTGTCAACTGTAAAGTAGAACGGAGCTCACCTGTCAGGCCTTCAATTCTTAATGGAGGAGTCGATCCCACAGGTCGAAATGCAGAGAAACCTATAACTGTGGATGAGGGAATTGATAGAGCTAAACCATGGCAGCTGTCAGAAATTGTTGATCCTGTTCAATGTCAGTCAGTTACCATGCCTGACAGTACAGATTCTTCCAGCAAGGTTGTTAGACTTTTGTATACGAACTCTGGTGCTGGTCTATTGGCACTTGGTTCAAATGGTGTTCAGAGGCTGTGGAAGTGGGCTCGTAGTGAACAAAATTCCAATGGGAAGGCTACTGCCAGCGTTGTTCCACTGCATTGGCAACCCCACAGTGGTCTTCTTATGACTAATGATGTCTCGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTTTGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCCCCTGCCTCTACCTTTTTGGCTTTCCACCCTCAAGATAATAACATCATAGCCATTGGGATGGAGGATTCAACAATTTATATTTATAATGTTAGAGTGGATGAGGTGAAATCCAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTTGCCTTTTCAACCTGCCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTCTGTGTATGGAACATTGATACATGGGAGAAAAGAAAATCAGTTCCACTACAACTGCCCACGGGAAAGGCTCCTGTAGGTGATACTCGTGTGCATTTCCATTTAGACCAAATTCGGCTACTGGTAGCCCACGAGACTCAGTTGGCAATATATGACGCCTCTAAAATGGATCGGATTCGGCAGTGGGTTCCTCAAGATATTCTGGCAGCTCCCATATCATATGCTGCTTATTCCTGCAATAGTCAGTTAATCTATGCTACATTTTGCGATGGAAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTGAGATGTCGTATAGCACTATCCACATACTTTTCGCCTGCGGCTTTAAGTGTGAACCAATCTGTGTATCCTGTTGTTGTTGCGGCTCATCCAGCAGAGGCCAATCAATTTGCCGTTGGATTGACAGATGGGTCCGTGAAAGTGATAGAGCCCAGTGAATCAGAAGGTAAATGGGGAACCAGTCCACCTATAGATAATGGAATAGTAAACGGTAGGACGGCATCATCATCTACAACAAGCAACCACACACCAGATCAGGCACAAAGATAA 3390 0.4357 MTSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNMKYFEEKVQAGEWEEVEKYLRGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAEAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPIAAVAKPSAYTSIGAHGPFPPAAATANANALGGWMANASASSSVQAAVVTASTMPVPQNQVSIMKHPRTPPTTPGMVDYQNADHEQLMKRLRPAPSLEEVSYPASRQPSWSLDDLPRTVAMTLHQGYSVTSMDFHPSHQTLLLVGSTNGEITLWELGLRDRLVTKPFKIWDISACSLPFQAAMAKDVSISVSRVTWSLDGNFVGVAFTKHLIHLYSYIGSNELVQRVEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFVFSTAIDGKIKAWLYDNAGSRVDYDAPGHWCTTLLYSADGSRLFSCGTSKDGESFLVEWNESEGAIRRTYNGFRKKSAGVVQFGTTQNRFLAAGEDGQIKFWEMDSINLLTTTDAEGGLQALPLLRFNKEGSLLAVTTADNGFKILANVSGLRSLRTVETPGFEALRSPIDSAAIKASGSSAVNVSTVNCKVERSSPVRPSILNGGVDPTGRNAEKPITVDEGIDRAKPWQLSEIVDPVQCQSVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQRLWKWARSEQNSNGKATASVVPLHWQPHSGLLMTNDVSGVNLDEAVPCIALSKNDSYVLSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIYIYNVRVDEVKSKLKGHQKRITGFAFSTCLNILVSSGADAQLCVWNIDTWEKRKSVPLQLPTGKAPVGDTRVHFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDILAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSVNQSVYPVVVAAHPAEANQFAVGLTDGSVKVIEPSESEGKWGTSPPIDNGIVNGRTASSSTTSNHTPDQAQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02696 1129 Gene3D - 828 1101 IPR015943 GO:0005515
Vian2g02696 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 930 944 IPR019775 -
Vian2g02696 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 807 858 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Vian2g02696 1129 SMART WD40_4 402 435 IPR001680 GO:0005515
Vian2g02696 1129 Gene3D - 563 694 IPR015943 GO:0005515
Vian2g02696 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Vian2g02696 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Vian2g02696 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Vian2g02696 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1113 IPR027728 GO:0006355
Vian2g02696 1129 SMART ctlh 34 92 IPR006595 -
Vian2g02696 1129 Gene3D - 326 562 IPR015943 GO:0005515
Vian2g02696 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 483 IPR001680 GO:0005515
Vian2g02696 1129 MobiDBLite consensus disorder prediction 1106 1129 - -
Vian2g02696 1129 FunFam Topless-related protein 3 730 964 - -
Vian2g02696 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Vian2g02696 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 909 1102 IPR011044 -
Vian2g02696 1129 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 346 948 IPR011047 -
Vian2g02696 1129 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 333 437 IPR011044 -
Vian2g02696 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Vian2g02696 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vian2g02696 1129 SMART Lish 4 36 IPR006594 GO:0005515
Vian2g02696 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Vian2g02696 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vian2g02696 1129 MobiDBLite consensus disorder prediction 1092 1129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02696 Vian-Chr2 47840541 47848959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02696 447 656 Miscellaneous Gene Families AT5G08390 25.234 7.52e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02696 2 47840541 47848959 Vian2g02696 2 47840541 47848959 ECH
Vian2g02696 2 47840541 47848959 Vian3g01423 3 15615555 15617171 PCT