Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02680 ATGGTGTTGTCTTGGACTAGAAGAAATGTTTTCCGTCGTGCCAAGAAGGAGAAGGGACAGATTCAAGGTGGTGGCCGTGGTGGTGAGTTGGAGGTGGAGGTTGTGATCCCCAACCACTTTCGGTGTCCGGTGAGTTTGGAGCTGATGACGGACCCGGTGACTTTATCAACCGGCATCACCTACGACAGGGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAAGACCTGCCCCGTCACCAACCAGGTGCTCACGAACTTTGACAACATCCCCAACCATGCCATTCGTAGGATGATTCAGGATTGGTGCGTTGAAAACAGCTCTTATGGGATTGAGAGGATCCCCACTCCTCGGATTCCTCTCTCCAGCTACGAGGTTTCTCAGACATGTACCAGGATCTTGTCGGCTTGTCGGCGCGGGGATGATAAAAAGTGCCAGGAGTTGGTTGGGAAGATTAAGGATTGGGGGAGAGATGAGAGGAACAGGAAGTGCATAATTGGGAGTCGTGCTAGAACTGATGCTGGCAATGGTGCCGATGCAGTTCTTGGACATGCCTTCGATTGTTTCTCAAGCGGTGACTCTTTTGACACGCATGTGGTTGTTTTGGAGGAGATTTTGGAGGTGCTGACATGGATGATCCCACTTGGGGAAGAGGGTGTGTCTAAATTGAGTTCAAAAGCTTCATTGAATTGCCTGGTTTGGTTTCTCGAGGGGAAAGACCTTGCATCTAGGCAAAGTGCTGCTTTGTTGCTCAGGCAAGTGCATGTTCAAGAATTGGCCAGAGTTGGAAAAGTGGCTGAAGCTTTGGTTAAAATGATTAGGGAGCCCACTGGGAGTGCTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCATCAGCTGAGAACAGAGGGGAAATTACTGAAAGATTTGTGGAGTTGGATTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGATAAAGGGGTGTGCGAGAAGGCACTTGGGATTTTGGATTGCGTTTGTGATATCCAGAAGGGGAAGGAGGTTGTTAAGAACAATGCTCTTACTCTGCCTCTTGTCGTTAAGAAGCTTTTGAGGGTGTCACCATTGGCTTCAAGTTTTGTTGTCTCTATTCTTAAGAAGAATTTTGACAAGAAGGAGGATGGAGCTCTGATTGAGGCAGTTCAACTAGGGACTTTTCAAAAGCTCTTGGTTTTACTACAGGTTGGTTGTGATGATAGCACAAAGGAGAATGCTACAGAGTTGTTAAAACTGTTGAACAGTTATAGGAACAAAGCGACGTGCACTGACTCATCATCGGATTTCAAGTATCTTAAGAAGTCATTCTGA 1341 0.4691 MVLSWTRRNVFRRAKKEKGQIQGGGRGGELEVEVVIPNHFRCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNKTCPVTNQVLTNFDNIPNHAIRRMIQDWCVENSSYGIERIPTPRIPLSSYEVSQTCTRILSACRRGDDKKCQELVGKIKDWGRDERNRKCIIGSRARTDAGNGADAVLGHAFDCFSSGDSFDTHVVVLEEILEVLTWMIPLGEEGVSKLSSKASLNCLVWFLEGKDLASRQSAALLLRQVHVQELARVGKVAEALVKMIREPTGSASTKACLATIFNLVSSAENRGEITERFVELDLVSLLLEAIVDGDKGVCEKALGILDCVCDIQKGKEVVKNNALTLPLVVKKLLRVSPLASSFVVSILKKNFDKKEDGALIEAVQLGTFQKLLVLLQVGCDDSTKENATELLKLLNSYRNKATCTDSSSDFKYLKKSF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02680 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 109 IPR013083 -
Vian2g02680 446 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
Vian2g02680 446 SUPERFAMILY RING/U-box 30 112 - -
Vian2g02680 446 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Vian2g02680 446 FunFam RING-type E3 ubiquitin transferase 30 112 - -
Vian2g02680 446 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Vian2g02680 446 SUPERFAMILY ARM repeat 125 427 IPR016024 -
Vian2g02680 446 PANTHER WDSAM1 PROTEIN 33 432 IPR045185 GO:0061630
Vian2g02680 446 CDD RING-Ubox_PUB 37 88 IPR045210 -
Vian2g02680 446 Gene3D - 221 433 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02680 Vian-Chr2 47674118 47675458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02680 28 446 U-box Gene Family AT5G37490 47.307 2.71e-125 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02680 - - var:108327887 857.44