Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02662 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAGAGGAGGTAGAGGTAGAGGAGGACGTGGCAGAGCCCAGTCTGGCCGTGGGCTAAGCGGGTCTCTTAATGGTGGAAGAATGGCCGGTGCTGTTAATGGTAGAAGAATGACTGGTGCTGGTAATGGTGGAAGAACATCTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCATCATCATATGCTATTGCCAAGGCAAGCTCAAAAATCTCTATTCGCAGAACTAGGCCATTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGAATTCAAGGAGTAGAAGTTGGCACCAAGTTATATGTTTCCAACTTGGATCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCGGCTGAAGTTGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTGCTTCTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATGCAGAATTGCCCGTAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGACCAGCTGGAGGTCGTGCTATTCCTAATCGTGGTGCTGGTTGGGGACGTCGTGGTGGCACAAGGAGTGGCAATGGTCGGGGTAGAGGTGGTGGAGGTCGTGGTCGTGGCAACGGTCGAGGTGGAGGTCGAGGCCGTGGTAGAAAAGACGCCGTTGAGAAGTCAGCAGCAGAACTTGACAAAGAACTGGAGACCTATCACGCTGAGGCCATGAACATCTCTTGA 906 0.4768 MASSLDMSLDDRIKNRSNRGGRGRGGRGRAQSGRGLSGSLNGGRMAGAVNGRRMTGAGNGGRTSGAVRRGPLMVNTRPSSYAIAKASSKISIRRTRPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNAELPVSARVNVTGVNGRRKRTVVMTPRGGPAGGRAIPNRGAGWGRRGGTRSGNGRGRGGGGRGRGNGRGGGRGRGRKDAVEKSAAELDKELETYHAEAMNIS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02662 301 Coils Coil 276 296 - -
Vian2g02662 301 SUPERFAMILY RNA-binding domain, RBD 115 195 IPR035979 GO:0003676
Vian2g02662 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Vian2g02662 301 SMART rrm1_1 122 194 IPR000504 GO:0003723
Vian2g02662 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Vian2g02662 301 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 298 - -
Vian2g02662 301 CDD RRM_THOC4 121 195 - -
Vian2g02662 301 SMART FoP_duplication_2 225 301 IPR025715 -
Vian2g02662 301 MobiDBLite consensus disorder prediction 221 283 - -
Vian2g02662 301 Gene3D - 116 197 IPR012677 -
Vian2g02662 301 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02662 Vian-Chr2 47471577 47475890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02662 120 195 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 3.22e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02662 K12881 - gmx:100820344 422.165