Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02660 ATGTCCACTGCGAGAGTTCAAGTTTCGGCGTGTGCGCTTTCCGCTGCCGTCAACAACCTCCGTCTCCGGCCAACCGCCGTCGTTTCCTTCACCAACCATTTCAGGAAGAAGTCTCTGAGGGTGGTGTCAATGTCGTCCGTTCCCCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACTACACCCAATAGGCTCGGCGACTGGAATGGTGATGTGCATGAAAGGATTACAGAAAGAGAAACGCGGCATGGTGAAGATGAAGGGAAGGAAATTAGGATGTATCTGGACTCAAATTATGTCCACGTCCCTTTTGCCAAAGGGTTCCTTAAAGCCAATCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCGGATTCAGATGTTATCACTCAAACATTGGAAGAGAAGTATCCTATCCCACCATTGGTGACCCCACCCGAAAAGGCCACAGTAGGTTCAAAGATATTTTCTACATTTATTGGATTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATAAAGGAAAATGGCCCTTATATTAACGGTAATGAGATATGTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTGGAGATTGCTCTGGGGCATTATAAGAAATGGACAGTACCTGATTCACTTACCTCTTTGAAGGCTTACACGAAGGCGATTTTCTCGAGGGAATCGTTCATTAAAACAAGTGCACAACCGCAGGATGTCATTGAAGTTCCTAAAGGTACTGTTGGAATCCGAGGTTCCAAACCCTCAATCAAACAAACTCTGCAACTAACTTTAATGGCTTCTGGAGACTTCATTAATAAATCCCTCTCACTTCCTCCATACCCCGAGATGATTTTGGAGGCAGTTGAGGCACTGAATGACGGGAATGGTTCGAATAAAACATCAATTTCGAAGTACATAGAATCTAGGTACGGTGTGTTGCCTCCGGGCCACAAGGTACTGCTGAATGTACACCTTGCAAAAATGAGGGACACTGGGGTGCTTGACTTTTGGAAGAATAACTACACCAAGTGTGACCCAAACGCGCCGCCGCGGCGTGGCCGTGGCAGGCCACCTAAGCCCAAGGAACTTCTGCCTCCGGACACTGTCCTGTCACCGCCCAGGCCCAGGGGCCGCCCCCCAAAGGGCCCAAGTGACATGCAAAGGCCACCCAAAGCCACCGCTGGGAGTGGCAGACCCAGAGGCCGGCCTAGGAAGATGGCGCGGCCAGCCGGAGGATTTGGGGAACCATCGGCTTCCTCGTTGAAGCCCAGCGCAAGGCCCAGAGGAAGGCCTCCGAAAGTGAAGCCCGGATTGATAGAAAATAATGCTTAG 1398 0.4921 MSTARVQVSACALSAAVNNLRLRPTAVVSFTNHFRKKSLRVVSMSSVPPSQPFEIAVKASVTTPNRLGDWNGDVHERITERETRHGEDEGKEIRMYLDSNYVHVPFAKGFLKANPDGKVPVIKFDEKWVPDSDVITQTLEEKYPIPPLVTPPEKATVGSKIFSTFIGFLKSKDPNDGTEQALLSELSSFNDYIKENGPYINGNEICAADLSLGPKLYHLEIALGHYKKWTVPDSLTSLKAYTKAIFSRESFIKTSAQPQDVIEVPKGTVGIRGSKPSIKQTLQLTLMASGDFINKSLSLPPYPEMILEAVEALNDGNGSNKTSISKYIESRYGVLPPGHKVLLNVHLAKMRDTGVLDFWKNNYTKCDPNAPPRRGRGRPPKPKELLPPDTVLSPPRPRGRPPKGPSDMQRPPKATAGSGRPRGRPRKMARPAGGFGEPSASSLKPSARPRGRPPKVKPGLIENNA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02660 465 Gene3D - 149 266 - -
Vian2g02660 465 SUPERFAMILY "Winged helix" DNA-binding domain 295 380 IPR036390 -
Vian2g02660 465 MobiDBLite consensus disorder prediction 384 408 - -
Vian2g02660 465 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 298 367 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian2g02660 465 Pfam Glutathione S-transferase, N-terminal domain 110 146 IPR004045 -
Vian2g02660 465 Gene3D Glutaredoxin 90 148 - -
Vian2g02660 465 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 54 264 IPR044627 GO:0033355|GO:0045174|GO:0098869
Vian2g02660 465 FunFam HMG-Y-related protein A 294 376 - -
Vian2g02660 465 Pfam linker histone H1 and H5 family 300 360 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian2g02660 465 PRINTS AT-hook-like domain signature 393 404 IPR017956 GO:0003677
Vian2g02660 465 PRINTS AT-hook-like domain signature 417 427 IPR017956 GO:0003677
Vian2g02660 465 PRINTS AT-hook-like domain signature 373 383 IPR017956 GO:0003677
Vian2g02660 465 MobiDBLite consensus disorder prediction 362 465 - -
Vian2g02660 465 SUPERFAMILY GST C-terminal domain-like 151 263 IPR036282 -
Vian2g02660 465 Gene3D - 295 369 IPR036388 -
Vian2g02660 465 FunFam Glutathione S-transferase DHAR3, chloroplastic 149 269 - -
Vian2g02660 465 SUPERFAMILY Thioredoxin-like 104 147 IPR036249 -
Vian2g02660 465 PRINTS High mobility group protein (HMGY) signature 371 383 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vian2g02660 465 PRINTS High mobility group protein (HMGY) signature 395 406 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vian2g02660 465 PRINTS High mobility group protein (HMGY) signature 408 427 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Vian2g02660 465 SMART h15plus2 296 362 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vian2g02660 465 SMART AT_hook_2 419 431 IPR017956 GO:0003677
Vian2g02660 465 SMART AT_hook_2 373 385 IPR017956 GO:0003677
Vian2g02660 465 SMART AT_hook_2 447 459 IPR017956 GO:0003677
Vian2g02660 465 SMART AT_hook_2 395 407 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02660 Vian-Chr2 47438585 47448787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02660 40 262 Glutathione S-transferase Gene Family AT5G16710 61.435 3.15e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02660 K21888 - gmx:732557 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02660 2 47438585 47448787 Vian2g02660 2 47438585 47448787 ECH