Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02651 ATGGCACTGGCCAAAGACCAAAACATTCCACATGATTCAACCATGAGCACCAAGGTTCCAAACTGTGTTTTCAGTGAGGCCGTGGAAACTACCTCAGTGACCGTTCATAGGGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAAATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGACGAAGAAGAATCACTGATTCATTTCAAAGGGTACAGCAATCTCATGCAAGGAGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAGTTTGCATCAAGGTCATAACCACTGGAATCAGCATAGTCCAAGAAGTAATAAAGACATGCGCCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTTGCTATGGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTATACTCAGCATCAACTATCCCTAATGATAAGAGCCTCCACAATTTAGCAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACGCTAAAACACAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAAGAACTAGTGCCTAACGGCTCCAAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTCAAGTTTCTTCAACTTCAAGTGAAAGTGTTGGCAACTGATGAATTATGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAAATCAGATATTGCAATACACAACAACATAAGGGAATTGTTGGCACTTCTTCATATCGGGCACTTGGAAGCAAAGCACCAAGCTCTAGACAACATTGTTGAGGCCATGAAGGAAGATGAGAAGAACGTTTTAGCGGCTCTTGGTCGGAGCAACATTGTTGTGTTAAAGTTGGGATCTTTAGGTGCTCAGCAAGCTGCCTTAGCCTCCATATGCAGAGTTTGCAGCTCGACAGACATGAAGAAAATGGTTGGTGAAGATGAATGCATCCCTCTCCTTATGAAAATGCTTGAAGCTAAGTCAAACAGTGCTAGAGAGGTTGTTGCTCTTGCAAGCCTGATGATTGTGTTTCAAAATAGGAGAGAAGTAAAAAAGGATGATAATTACGCCATTTAA 1389 0.432 MALAKDQNIPHDSTMSTKVPNCVFSEAVETTSVTVHRVNEYHKSVIEEENGSQTTNGLSNDSGITHSPPLSGSGKGYTYKEKSYQLDEEESLIHFKGYSNLMQGGESLLSFQHNRLVPNSCYSKDISQKEYCVWENSLHQGHNHWNQHSPRSNKDMRLVQDFNCFQTASCYGSMVDNAKEKQYGERSSGWLYSASTIPNDKSLHNLAAREMVLQKRPSMGESMKAAKKQCSTESKTLKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDELWPAQGGKPPDISQVKEVIDAIRSSQRERKSDIAIHNNIRELLALLHIGHLEAKHQALDNIVEAMKEDEKNVLAALGRSNIVVLKLGSLGAQQAALASICRVCSSTDMKKMVGEDECIPLLMKMLEAKSNSAREVVALASLMIVFQNRREVKKDDNYAI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02651 462 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 120 301 IPR045843 GO:0003700|GO:0006355
Vian2g02651 462 Gene3D - 317 458 IPR011989 -
Vian2g02651 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Vian2g02651 462 FunFam Transcription factor bHLH83 241 300 - -
Vian2g02651 462 Gene3D - 237 300 IPR036638 GO:0046983
Vian2g02651 462 CDD bHLH_AtIND_like 244 306 - -
Vian2g02651 462 MobiDBLite consensus disorder prediction 44 78 - -
Vian2g02651 462 MobiDBLite consensus disorder prediction 217 256 - -
Vian2g02651 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 303 IPR036638 GO:0046983
Vian2g02651 462 MobiDBLite consensus disorder prediction 48 72 - -
Vian2g02651 462 Pfam Helix-loop-helix DNA-binding domain 253 293 IPR011598 GO:0046983
Vian2g02651 462 SUPERFAMILY ARM repeat 339 445 IPR016024 -
Vian2g02651 462 SMART finulus 249 298 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02651 Vian-Chr2 47314112 47324805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02651 75 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.247 3.25e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian2g02651 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02651 - - gmx:100810010 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02651 2 47314112 47324805 Vian2g02651 2 47314112 47324805 ECH