Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02650 ATGGAGAGTCCCCATTCGCTCTCTCCCTCGTCTTCCTCCTCGTATTCCTCCGACGGAGTCACTTTCGACACGGAGGAGCCGCGGACACCGCTCGCCGTGCGCCGCGCCCTGCAACTCATCAACTCCGGCGAGCCCCACCTCTGCCTTCAAGCCGCTCGTGACATCCGCCGACTCACCAAGACGTCCCAACGTTGTCGGCGCCAACTTTCTCAGGCTGTCGGTCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAATCCGCTCTCCTCGCCTTGCTCAACCTCGCCGTCAAGGACGAAAAGAACAAAATCAATATTGTGGAGGCTGGTGCATTAGAACCGATAGTTAGTTTCCTCAAGTCTCAAAATGTAAATCTGCAGGAGTCTGCAACTGCATCATTGCTCACACTATCTGCCTCTTCGACCAACAAACCAATTATCAGTGCTTGTGGTGCCATTCCTCTTCTTGTAGAGGTCCTTAGAGATGGAAGCCCCCAAGCTAAAGCTGATGCAGTAATGGCTCTTTCTAATTTATCAACTCACCCTACTAATCTCAGTACCATTCTCGAGACAAACCCAATCCCTTTCATAGTTGATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGCGCTTTGATAGAATCCTTGGTGGATTATGACGAGGGCAGAACTGCCCTGACATCTGAGGAAGGCGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAGCATGCTGTTGGAGCACTGTTGACAATGTGCCAAAGCGATCGATGTAAATACCGGGAACCAATTCTAAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGGACACCTAAGTCTCAGTCAAAAGCACGCACCCTTTTGCAGTTACTGCGAGAGTCTCCTTATCCGAGATCTGAAATTCAACCTGACACTCTGGAGAATATAGTGTGCAACATCATATCACAGATTGATGGGGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTAAGCATGGAACAAAGTCTGAGACATTTACAACAAAGGGCTCTCGTCTGCACCCCAAGTGATCTTCCTATCGCTGGCTGTGCTTCTGAAGTTTCTTCAAAATGA 1164 0.4914 MESPHSLSPSSSSSYSSDGVTFDTEEPRTPLAVRRALQLINSGEPHLCLQAARDIRRLTKTSQRCRRQLSQAVGPLVSMLRVDSPESHESALLALLNLAVKDEKNKINIVEAGALEPIVSFLKSQNVNLQESATASLLTLSASSTNKPIISACGAIPLLVEVLRDGSPQAKADAVMALSNLSTHPTNLSTILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQSKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSSK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02650 387 SMART arm_5 184 226 IPR000225 GO:0005515
Vian2g02650 387 SMART arm_5 102 142 IPR000225 GO:0005515
Vian2g02650 387 SMART arm_5 61 100 IPR000225 GO:0005515
Vian2g02650 387 SMART arm_5 143 183 IPR000225 GO:0005515
Vian2g02650 387 SMART arm_5 228 268 IPR000225 GO:0005515
Vian2g02650 387 FunFam U-box domain-containing protein 4 17 369 - -
Vian2g02650 387 PANTHER U BOX DOMAIN-CONTAINING 32 315 - -
Vian2g02650 387 MobiDBLite consensus disorder prediction 1 27 - -
Vian2g02650 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 154 196 IPR000225 GO:0005515
Vian2g02650 387 Gene3D - 20 370 IPR011989 -
Vian2g02650 387 Pfam Armadillo/beta-catenin-like repeat 103 140 IPR000225 GO:0005515
Vian2g02650 387 Pfam Armadillo/beta-catenin-like repeat 146 182 IPR000225 GO:0005515
Vian2g02650 387 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02650 387 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 155 IPR000225 GO:0005515
Vian2g02650 387 SUPERFAMILY ARM repeat 33 337 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02650 Vian-Chr2 47304177 47307562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02650 50 310 U-box Gene Family AT2G23140 34.601 5.18e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02650 - - gmx:100780954 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02650 2 47304177 47307562 Vian2g02650 2 47304177 47307562 ECH
Vian2g02650 2 47304177 47307562 Vian7g01675 7 26222346 26225328 PCT