Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02636 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCAGAGAGGCGAGCATTGCGTGTTCATGCAGCTCGTCCTAGTAATTCTAATTCACTCACTTTTCTCGTGACAGTCCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAATTTTCTGCTATGGCTGGTGCTCGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCATTCTTGGCCACACGGAACTGAGGTTGCATATGCCACCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCTCTTCTTGACCGGGAGTTTGATGATCTTGATTATGAAACTTTAAGAGCTTTAGATTCAGATAATGTTTCTACGGCAGCTTCCATGACCGAGGAAGAGATAAATGCTCTTCCGGTCCACAAATATAAGGTTGCTGGTCCCCAGAGTGGTGGTTCATCAATGCAACAAGCATCATCATCCACTTCTGCTGAGAAGAAGCAAGATAATTCAGGGGCTGTTGGGAGCATGAAAGCCTCTGACGATGAACTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGAAGTACTGCGTAGCTTACCTTGCTTGCATCAGTTTCACGCTAGTTGCATCGATCCTTGGCTGCGTCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGGTGGAGTGACAATGGACATAATGATATCGCGGACATGGTTTGA 822 0.4611 MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAASMTEEEINALPVHKYKVAGPQSGGSSMQQASSSTSAEKKQDNSGAVGSMKASDDELTCSVCLEQVNVGEVLRSLPCLHQFHASCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIADMV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02636 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Vian2g02636 273 SMART ring_2 213 253 IPR001841 -
Vian2g02636 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 259 IPR013083 -
Vian2g02636 273 MobiDBLite consensus disorder prediction 176 202 - -
Vian2g02636 273 Pfam Ring finger domain 212 254 IPR001841 -
Vian2g02636 273 CDD RING-H2_PA-TM-RING 212 254 - -
Vian2g02636 273 PANTHER TARGET OF ERK KINASE MPK-1 1 260 - -
Vian2g02636 273 MobiDBLite consensus disorder prediction 173 205 - -
Vian2g02636 273 SUPERFAMILY RING/U-box 208 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02636 Vian-Chr2 47079521 47082177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02636 1 273 C3H Transcription Factor Family AT3G55530 78.261 4.84e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02636 K16283 - gmx:100777936 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02636 2 47079521 47082177 Vian2g02636 2 47079521 47082177 ECH