Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02627 ATGGCGAATCGGTGGTGGGCTGGGAATGTGGGAATGATTAGAGAGCAAGAGTTGATGGAGAACAATAACAACGCCAATACTACTCCGACCAATAGCAGCAACAGCAACACAAACGCCAACACCAACACCACGGAAGAAGAGGTCAGCAGGGACAACGGAGACGACCAGAATCAGAACCTTGTAAGCCATGAAGGTTCGGAGCCCGGAAGCGGTGGTCGGAGGCCACGTGGCAGGCCTCCCGGCTCCAAGAACAAGCCCAAGCCGCCGATTATCATAACCAAAGAAAGCCCCAACGCGCTCCGAAGCCACGTGCTGGAAATCGCCAGCGGTAGTGATGTAGCAGAGAGCATCGCCGCCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTCCTCAGCGGCAGCGGCATTGTCACCAACGTCACTCTCCGCCAACCCGCCGCGCCCGCAGGAGTCATCACCCTCCACGGAAGGTTCGAGATTCTCTCCCTCTCCGGCGCTTTTTTGCCCTCTCCTTCGCCTCCTGGCGCCACCGGACTCTCCGTCTATTTGGCCGGAGGGCAGGGGCAGGTCGTTGGCGGCACCGTTGCTGGTTCTTTGGTGGCCTCCGGGCCGGTGATGGTGATCGCCGCCACATTCGCCAATGCTACTTATGAGAGGCTGCCGCTGGAGGATGAACAAGGTGAAGAAGAAATGCAAGTGCAACAGCAATCGCAGCCGCAACAACAACAACAACAATCTCAGGGTTTAGGTGAACAAGTTTCAATGGCCATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGTTTTGGGGAGCTGCTCCACCTCGTCCTCCACCTTCCTTCTGA 867 0.5698 MANRWWAGNVGMIREQELMENNNNANTTPTNSSNSNTNANTNTTEEEVSRDNGDDQNQNLVSHEGSEPGSGGRRPRGRPPGSKNKPKPPIIITKESPNALRSHVLEIASGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLSVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQSQPQQQQQQSQGLGEQVSMAMYNLPPNLLHNGQNMPHDVFWGAAPPRPPPSF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02627 288 ProSiteProfiles PPC domain profile profile. 97 234 IPR005175 -
Vian2g02627 288 MobiDBLite consensus disorder prediction 22 46 - -
Vian2g02627 288 PIRSF ESCAROLA 11 287 IPR014476 GO:0003680
Vian2g02627 288 MobiDBLite consensus disorder prediction 22 97 - -
Vian2g02627 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 279 IPR014476 GO:0003680
Vian2g02627 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Vian2g02627 288 Gene3D - 100 242 - -
Vian2g02627 288 MobiDBLite consensus disorder prediction 224 251 - -
Vian2g02627 288 FunFam AT-hook motif nuclear-localized protein 100 228 - -
Vian2g02627 288 CDD DUF296 101 212 IPR005175 -
Vian2g02627 288 MobiDBLite consensus disorder prediction 231 251 - -
Vian2g02627 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02627 Vian-Chr2 46989217 46990083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02627 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 54.747 1.24e-77 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02627 - - gmx:102667174 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02627 2 46989217 46990083 Vian2g02627 2 46989217 46990083 ECH
Vian2g02627 2 46989217 46990083 Vian7g01641 7 25743566 25744408 PCT