Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02625 ATGGAGGATTCTCAGTACTTGTTGTGGTTCAAGAGAAAACAAATCTTGAACTCACATATTCAACAACCATTTGGAGCCCGCATCACCAACACCAACTCATCATGGGAGGAAAGAGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGATCATACTCTTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTTCACAGGAGGGACAGGGCTAGGCTCAAACAAAGCCTTGGTCACCCTAATGAATCCCTTCAACATCTTCACAAAAATGATTGTTCAGCTGCAGCAAGCAAAGCCTCATCTTCTAGGCCCTCAACTATATCCACTCAAGAAAATTGTTATCATCAACCTACCATGTCTCCTTACTCTCCTTCGTTTAGCTGGGGACATCACCACATGGGCTCTTCTGATTCAGAACCAAAAGGGTCTGCAGTGAATGGAAGGGAACAGTTTTTAAAAGGTTCGGGTTGCAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTTCAGTGTTTGGCCAAAAGTTACCAATTGAATCATATGGGGACGAAGCTATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGTCTTCCACAAGCCATGTTCAAGTGATAGACACCTAACTTTTCATTCTGCAGAATTCGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 774 0.4315 MEDSQYLLWFKRKQILNSHIQQPFGARITNTNSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLGHPNESLQHLHKNDCSAAASKASSSRPSTISTQENCYHQPTMSPYSPSFSWGHHHMGSSDSEPKGSAVNGREQFLKGSGCNDYVETSLSVGQSSVFGQKLPIESYGDEAISYKRSKTSMPPLPVFHKPCSSDRHLTFHSAEFVLGLKPGMEDLDLELRLGKPQKVI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02625 257 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vian2g02625 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Vian2g02625 257 Pfam C2H2-type zinc finger 58 82 - -
Vian2g02625 257 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Vian2g02625 257 PANTHER OS07G0101800 PROTEIN 29 254 - -
Vian2g02625 257 MobiDBLite consensus disorder prediction 139 158 - -
Vian2g02625 257 SMART c2h2final6 58 80 IPR013087 -
Vian2g02625 257 MobiDBLite consensus disorder prediction 105 128 - -
Vian2g02625 257 Gene3D Classic Zinc Finger 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02625 Vian-Chr2 46967923 46968785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02625 20 90 C2H2 Transcription Factor Family AT2G37740 66.216 9.79e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian2g02625 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02625 - - gmx:102663477 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02625 2 46967923 46968785 Vian7g01639 7 25683023 25683763 PCT