Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02615 ATGGCTGGGATTTGCTGTAGAGTTGTTGGAGAAGGTGACACCCCTACTCCTCTAGAACCAACCTCTCGTCCTTCCACCCGCAGAACTATGGATATGGTACCCTTGAAGTACATAGCTGACATGGCTGTGCCCGACTCTTCCCGAAAGCGCCCCAAGCTCGATCTCAATGACACTGATAACCAACTTCAAACTGACCGGGAATCCTCCGGAACCAAGGTTATGAAGAAGGATTCCCAATTCCTCAACAACGAACAAGACGAGGATGATGTTTCAGACACTAAATCCCTGACAGACGAGGATGACGACTCCGAAGATGAAGAGTGTCCCAAGTATGGAGTCACCTCTGTCTGTGGCAGGAGGAGAGACATGGAGGACTCCGTTTCCCTGCGCCCTTTCTTCTCGCTTGAAGGCTTCCACTACTTTGGCGTTTTTGACGGTCACGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGAGGCTCCACGAGATTGTGAACGAAGAGATTCTGGATGGAGACGACTCTCTACAGTGGGGAACAATGATGCAGAGCAGTTTTGCTCGCATCGATGAAGAGGTTTTCCGCCGCAGCCAGAGCAACCAGACTTTCAACTGTCGATGCGAGCTCCAGACTCCGCACTGTGACGCAGTTGGATCCACTGCTATCATCGCGATCCTCACCCCAGACAAGATTGTCGTCTCCAACTGCGGCGACTCCCGTGCTGTTCTCTGCCGTGGCGGAGTTGCCATTCCTCTCTCTTCGGATCACAAGGATAACCGTTTTTGGATCCGTGTTGTTCAGCCGGACCGCCCCGACGAATTGCTCCGAGTGGAATCCAAAGGCGGGCGCGTGATTTACTGGGACGGCGCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTACCTGAAGCCATTCGTGATTTCAGAGCCCGAGGTGACTGTGACTGAGCGAAGTGATGATGATGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGAAACTGCTTGTGGGGTGGTGAAGATGTGCCTGAAGTCGCAGAAGCCCCCGACTCCTCCGGGCTCTCCTGGTCATGGTTATGTGACGGCAGACGGCTCCGACCGTGGTTGCTCGGATGCCTCAATTCTGTTGACCAAGTTGGCTTTGGCAAGGCACAGTGCCGATAATGTGAGCGTGGTGGTGCTTGATCTGAGGAAGGATCCAGAACAAACATCCACTTCCACTTCCAGCTACGTTAACGAATGA 1269 0.5296 MAGICCRVVGEGDTPTPLEPTSRPSTRRTMDMVPLKYIADMAVPDSSRKRPKLDLNDTDNQLQTDRESSGTKVMKKDSQFLNNEQDEDDVSDTKSLTDEDDDSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSLEGFHYFGVFDGHGCSHVATMCKERLHEIVNEEILDGDDSLQWGTMMQSSFARIDEEVFRRSQSNQTFNCRCELQTPHCDAVGSTAIIAILTPDKIVVSNCGDSRAVLCRGGVAIPLSSDHKDNRFWIRVVQPDRPDELLRVESKGGRVIYWDGARVLGVLAMSRAIGDYYLKPFVISEPEVTVTERSDDDECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPGSPGHGYVTADGSDRGCSDASILLTKLALARHSADNVSVVVLDLRKDPEQTSTSTSSYVNE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02615 422 MobiDBLite consensus disorder prediction 69 90 - -
Vian2g02615 422 Pfam Protein phosphatase 2C 110 366 IPR001932 -
Vian2g02615 422 Gene3D - 105 413 IPR036457 -
Vian2g02615 422 ProSiteProfiles PPM-type phosphatase domain profile. 110 405 IPR001932 -
Vian2g02615 422 FunFam Protein phosphatase 2C 50 114 413 - -
Vian2g02615 422 MobiDBLite consensus disorder prediction 91 107 - -
Vian2g02615 422 PANTHER PROTEIN PHOSPHATASE 87 405 IPR015655 GO:0004722|GO:0006470
Vian2g02615 422 MobiDBLite consensus disorder prediction 9 110 - -
Vian2g02615 422 SUPERFAMILY PP2C-like 110 406 IPR036457 -
Vian2g02615 422 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Vian2g02615 422 SMART PP2C_4 98 403 IPR001932 -
Vian2g02615 422 CDD PP2Cc 110 405 IPR001932 -
Vian2g02615 422 MobiDBLite consensus disorder prediction 43 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02615 Vian-Chr2 46871549 46873129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02615 109 407 PP2C-type Phosphatase Gene Family AT1G07430 57.927 1.03e-131 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02615 K14497 - gmx:100776356 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02615 2 46871549 46873129 Vian7g01637 7 25655101 25657308 ECH
Vian2g02615 2 46871549 46873129 Vian2g02615 2 46871549 46873129 ECH
Vian2g02615 2 46871549 46873129 Vian7g01637 7 25655101 25657308 PCT