Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02612 ATGGCGGAATTGGAGGAGGACCGGATGGGGGATTTCAAGCCCTTCTCGGAGGGCTCTTCGTGTTCGCGCTCGATCAGCGAAACGGTGAATGGGTCGCACCAATTCACGATAAAGGGGTACTCTCTCGCAAAGGGGATGGGTGCTGGGAAGTACATCATGAGCGACACATTTAGCGTCGGTGGTTACGATTGGGCAATTTACTTCTACCCTGACGGGAAGAACCCCGAGGACAATTCCATGTACGTATCGGTCTTCATAGCTCTCGCAAGCGATGGAACTGACGTTAGGGCTCTGTTCAAGTTGACGCTGGTGGATCAGAGTGAGAAGGGGAACGATAAGGTTCATAGCCATTTCGATAGGCCTCTTGATGGTGGACCGTACACCTTGAAGTATAGAGGCAGCATGTGGGGTTACAAGCGTTTCTTCAGAAGAACTCTACTGGAAACTTCGGAGTATCTAAAAGATGATTGCCTTGTCATGCATTGCACTGTTGGTGTTGTCAAAACTCGTTTTGAGGGATCTAAACAGGGTGTTATTGTGCCACTGTCAGACATGGGCCGAAATTTTAAGGACTTGCTGGACTCAGAGGTTTGTTGCGACATAGTTTTCAAGGTTAAAAGCGAGAGCTTCAAAGCTCATAAGTTAATACTTGCGGCACGATCTCCTGTGTTTAGAGCACAGTTTTTTGGACTTGTTGGGGATCCTAGCTTAGAGGAAGTAGTGGTAGAGGATATCGAGCCTTTTATCTTCAAGGCAATGCTTCTCTTCATTTATTCCGACAAACTTCCTGACATCTATGAAGTAATGGACTCAATGAATGTCTGCTCATATGCTGTCATGGTGCAGCATCTCCTGGCTGCTGCTGATCTTTATAATCTTGATCGGCTCAAACTTCTTTGTGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTAGCCACCACACTTGCCCTGGCAGAGCAACACCACTGTCCACAGCTGAAGGCAATCTGTTTGAAATTTATTGCAAATCCAGCAAATTTAGGAGCTGTGATGCAGTCGGAAGCTTTTGTGCATTTGAAAGAGAGCTGCCCCGCAATGTTGCTGGAACTGCTGGAGACGTTTGCCTCAGTGGACGATAACTCAAGCCTGACATTGAGCAGAAAGAGAAGTGGCAGTAGCATATATGGTCAAGATTTGGCAGACGGGGCAGCTGCTGAATCAGTTAATCCAAGTGGGAGGCGATTAAGGAGGCGAACATAA 1245 0.4675 MAELEEDRMGDFKPFSEGSSCSRSISETVNGSHQFTIKGYSLAKGMGAGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLVDQSEKGNDKVHSHFDRPLDGGPYTLKYRGSMWGYKRFFRRTLLETSEYLKDDCLVMHCTVGVVKTRFEGSKQGVIVPLSDMGRNFKDLLDSEVCCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSLEEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMDSMNVCSYAVMVQHLLAAADLYNLDRLKLLCESKLCEEINTDNVATTLALAEQHHCPQLKAICLKFIANPANLGAVMQSEAFVHLKESCPAMLLELLETFASVDDNSSLTLSRKRSGSSIYGQDLADGAAAESVNPSGRRLRRRT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02612 414 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 169 IPR008974 GO:0005515
Vian2g02612 414 SUPERFAMILY POZ domain 181 306 IPR011333 -
Vian2g02612 414 FunFam BTB-POZ and math domain 1 175 302 - -
Vian2g02612 414 ProSiteProfiles BTB domain profile. 199 262 IPR000210 GO:0005515
Vian2g02612 414 Pfam BTB/POZ domain 189 306 IPR000210 GO:0005515
Vian2g02612 414 SMART BTB_4 199 308 IPR000210 GO:0005515
Vian2g02612 414 SMART math_3 35 147 IPR002083 GO:0005515
Vian2g02612 414 CDD BTB_POZ_BPM_plant 185 305 - -
Vian2g02612 414 CDD BACK_AtBPM-like 305 368 IPR034090 -
Vian2g02612 414 Gene3D Potassium Channel Kv1.1; Chain A 175 303 IPR011333 -
Vian2g02612 414 CDD MATH 31 164 IPR002083 GO:0005515
Vian2g02612 414 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 364 IPR045005 GO:0016567
Vian2g02612 414 SUPERFAMILY TRAF domain-like 27 166 - -
Vian2g02612 414 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02612 414 Gene3D - 307 388 - -
Vian2g02612 414 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02612 Vian-Chr2 46828286 46834504 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02612 K10523 - gmx:100786636 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02948 2 50161568 50165136 Vian2g02612 2 46828286 46834504 ECH
Vian2g02612 2 46828286 46834504 Vian2g02612 2 46828286 46834504 ECH