Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02579 ATGGAATTCGAGACCCCATATCCAACTTGTTTTGTGTCAAATTCAAATTGGTTTGTTCAAGAGGGTCACTACACAGAATGGAGTAGAGAAGAGAATAAGCAGTTTGAAAGTGCCCTTGCCATATATGACAAGGATACCCCAGACAGATGGCTGAGGGTTGCGGCCATGCTCCCGGGAAGAAGTGTCTATGATGTGATAAAACAGTACAGGGAATTGGAAGAAGATGTTGGTGAAATAGAAGCAGGAAGGATTCCAATTCCTGGATATCTTACCTCTTCTTTCTCATTGGAGATGGTTGACAACCAATGTTATGATGCCTGCGGAAAGAAGTCTGCAACAGTCAGGAGTTCTGATCAGGAGAAGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGCAAATTTGTGATCACAAAGACTCCCACTCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAATACAATAAGAGGAGGCCTAGTATCCATGACATCACCATTGTTAATCTTACATCACACCAAGAGAAGTTCAATGAATCTCACATGCCCTCTGAGAAACTGAAGCTGAATAGCATGCCAAAAGTGCAGCTTGAATGGATAAATCGCCACAACAATATTGGTTCACTTGTGGCTTTCAATCCAAATTATGATATGTTGATGTCACCTTCATCTGGCATCGTATCTCCCAAGACCCTCAAATTGCAAGGTCTGGATTTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAATCCGGGTTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTCATGCCCGCTCTGA 894 0.4206 MEFETPYPTCFVSNSNWFVQEGHYTEWSREENKQFESALAIYDKDTPDRWLRVAAMLPGRSVYDVIKQYRELEEDVGEIEAGRIPIPGYLTSSFSLEMVDNQCYDACGKKSATVRSSDQEKKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKYYIRQKLSGGKYNKRRPSIHDITIVNLTSHQEKFNESHMPSEKLKLNSMPKVQLEWINRHNNIGSLVAFNPNYDMLMSPSSGIVSPKTLKLQGLDFYECAFHETYAKLKNPGFNKEAIFGIHALSCPL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02579 297 ProSiteProfiles Myb-like domain profile. 27 73 IPR001005 -
Vian2g02579 297 CDD SANT 26 72 IPR001005 -
Vian2g02579 297 Gene3D - 125 176 - -
Vian2g02579 297 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vian2g02579 297 Gene3D - 20 86 - -
Vian2g02579 297 SMART sant 23 75 IPR001005 -
Vian2g02579 297 SMART sant 123 173 IPR001005 -
Vian2g02579 297 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vian2g02579 297 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Vian2g02579 297 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vian2g02579 297 SUPERFAMILY Homeodomain-like 26 76 IPR009057 -
Vian2g02579 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vian2g02579 297 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 222 IPR043363 -
Vian2g02579 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vian2g02579 297 FunFam Transcription factor SRM1 19 86 - -
Vian2g02579 297 FunFam transcription factor MYB1R1 125 176 - -
Vian2g02579 297 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vian2g02579 297 CDD SANT 126 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02579 Vian-Chr2 46508174 46509302 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian2g02579 Myb_DNA-binding 7.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02579 - - gmx:100783469 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02579 2 46508174 46509302 Vian7g01597 7 25019650 25020682 ECH
Vian2g02579 2 46508174 46509302 Vian2g02579 2 46508174 46509302 ECH
Vian2g01006 2 17591809 17593445 Vian2g02579 2 46508174 46509302 ECH
Vian2g02579 2 46508174 46509302 Vian2g01006 2 17591809 17593445 ECH
Vian2g02579 2 46508174 46509302 Vian7g01597 7 25019650 25020682 PCT