Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02572 ATGAGCAGCAACACTGCGGTCAATTCCCCTGGATTCCTCGGCTCAAGCAACATCAGTGGCTACAGTTATGGCATAGGAATCTCCATTGGAATCCTGTTGCTCATCATAACTATCACTCTAACTTCTTACTTCTGCACCAGAACACATGTCTCGTTTGCTGCAGCTACCAGGAACAGAAGATTCACTCCGAATGTTCTTCAACCAGACCACTCTGTAGTTGATGTCAGTTTGGATGAAGCCACCATTCTCAGTTATCCAACCCTTCTATACTCTGAAGCCAAGGCTCAGAAGCGTGATTCCACTGCAACATGTTGCTCCATTTGTTTGGCAGATTACAAGGACACTGATATGCTTCGCATGCTACCTGATTGTGGACACCAATTCCACCTCAAATGCATAGATCCATGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCAATTCCAACGCCCCTCTCAACTCCACTGGCTGAGGTAGTTCCATTTGCTATCATACGAGATTCATAA 516 0.4554 MSSNTAVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRTHVSFAAATRNRRFTPNVLQPDHSVVDVSLDEATILSYPTLLYSEAKAQKRDSTATCCSICLADYKDTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPFAIIRDS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02572 171 CDD RING-H2_EL5-like 104 147 - -
Vian2g02572 171 FunFam E3 ubiquitin-protein ligase ATL6 66 152 - -
Vian2g02572 171 Pfam Ring finger domain 105 147 IPR001841 -
Vian2g02572 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
Vian2g02572 171 SUPERFAMILY RING/U-box 87 152 - -
Vian2g02572 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Vian2g02572 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 161 IPR045899 -
Vian2g02572 171 SMART ring_2 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02572 Vian-Chr2 46419514 46420029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02572 14 166 C3H Transcription Factor Family AT5G06490 51.429 1.83e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02572 - - gmx:100811799 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02572 2 46419514 46420029 Vian3g02603 3 40467244 40467747 PCT