Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02571 ATGGCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACGACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGTCCAGGGGACGACGTGCCAACCGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCGACAAGTTTGAGAATGCTCCATTGCCAGAACGATTGAAAAAAAATGTTACTCCACAACTTTATATCGACCAGATGAACAGAAAGATTGAAAAACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCTTGCACAATATACATGATGGTAAGTCTTTATCAGATCTTGATGCTAGCGATATATGTCGTTTACTTTGTTACGTGGAGGGAAAATTGAAGTGTGCTGGAGTAAAAGTTCACATTTCTGAACAACAGTTATCAACTAAAACTCCGACACCACTAGTTTCTTTTCCTCTGCAGAATGACATTGATTCTTGTGCTAACATAGATGAACAGGTTTTTCAACAACAATCATTCTTAGATTCAACGAAAGAAACTGGTCCAATGAATAGTGATTCCGATAATAATAAGAATACGGGACTACCACCACTACAGCAACACGCACATGATAATACGGGGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGGTATGGTGTTACATTCAGCAAATTTTAATGATGTGATTGATGATAATGGCTTGGCATTTGGGATGTTGGCTCAAGATAATTATATAGGTATTTGTGATAATGGTGATTTAGGGCTTTTACATGGGAGTTCTTCAGGTGGAGAAATTACAGGCAATGACATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAGAGTGATACCATGTTGCCCTTCAACAATAATGTTCAAGACAACATTGATGGAACTTTCATGGGAGCAAACGTTGAAAATGAAGGTGTCTCCATTAATAATATAGAGTTAAGCGGTGATCAAAGAACTACCAGTGGAGGACACTTGAACTCCTGA 1074 0.3734 MARRKKVTLKLIENFVARKARYRKIRENLLKKVEDLTTLCDVNACAIIYGPGDDVPTVWPSHDIAKELLDKFENAPLPERLKKNVTPQLYIDQMNRKIEKQVMKLKKKNDEKDMSNFLHNIHDGKSLSDLDASDICRLLCYVEGKLKCAGVKVHISEQQLSTKTPTPLVSFPLQNDIDSCANIDEQVFQQQSFLDSTKETGPMNSDSDNNKNTGLPPLQQHAHDNTGLSQVNFESLNLDDIGMVLHSANFNDVIDDNGLAFGMLAQDNYIGICDNGDLGLLHGSSSGGEITGNDIWSSYESFGDISESDTMLPFNNNVQDNIDGTFMGANVENEGVSINNIELSGDQRTTSGGHLNS 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02571 357 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Vian2g02571 357 Coils Coil 91 111 - -
Vian2g02571 357 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vian2g02571 357 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Vian2g02571 357 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Vian2g02571 357 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Vian2g02571 357 Gene3D - 16 123 IPR036879 GO:0003677|GO:0046983
Vian2g02571 357 SUPERFAMILY SRF-like 4 88 IPR036879 GO:0003677|GO:0046983
Vian2g02571 357 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Vian2g02571 357 MobiDBLite consensus disorder prediction 196 223 - -
Vian2g02571 357 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02571 Vian-Chr2 46408882 46409955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02571 4 170 Type I MADS-box Gene Family AT1G65300 30.000 7.50e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian2g02571 SRF-TF 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02571 - - var:108328520 711.064