Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02570 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCATGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCACGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTGATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA 993 0.4532 MAMQTVYLKEHEGNAPNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHHAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFDSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02570 330 MobiDBLite consensus disorder prediction 209 280 - -
Vian2g02570 330 MobiDBLite consensus disorder prediction 241 280 - -
Vian2g02570 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Vian2g02570 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Vian2g02570 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Vian2g02570 330 Gene3D - 160 222 - -
Vian2g02570 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Vian2g02570 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Vian2g02570 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 62 283 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02570 Vian-Chr2 46388228 46391553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02570 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.816 2.23e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian2g02570 CBFB_NFYA 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02570 K08064 - gmx:100815382 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02570 2 46388228 46391553 Vian3g02606 3 40501272 40502219 PCT