Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02569 ATGGCTACTGCAGCTTCTTTTTCCTCTTCTGTCTGCAACAGAATATACAACCTTTCCCTCACCCACTCTTCCATTTCACGCACCTCCAACTTCCCTCAGAGACCCATTTTCCAAAAACCACCCAATCTTAGCCACAAGTCCCAAAATTTCAGTCTTTCATTTCTTCCACTTCATCGTCTGTCCCCACCGTTCGCCACCTTCGATGGTTTGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAAGTTTCAGACTCGAACGACGATGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGTAGCGTGGTGTCTGTTGAGATTGTGTATGATCGTGTCACGGGTAGAAGCAGGGGATTCGCATTTGTCACAATGGCAACTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCGAAGGTAAACTTCCCAGAGGTACCGAAAGGAGGGGAAAGATTGGTAATGGGGGCAAAAGTGAGGAACAACTACAGAGGGTTTGTAGACAGCCCTCACAAGATCTATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAACCAGGCGTATTGAGCGCCAAAGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTTGGCTTTGTTTCTTTCACAACTGCCGAATCTGCAGCAGCTGCCTTGGACTTTATGACTGGTGTGGAAGTACAAGGTCGCCCATTGCGGTTGAATTTGGCTGAAGCTAGGGCAGCATCATCTCCTCCAGTACTTGAGGATAATGCAGGAATCAATGTTGAAAGCTCGGAATTGGTCTCAAGTGCCAGAACATAA 954 0.4727 MATAASFSSSVCNRIYNLSLTHSSISRTSNFPQRPIFQKPPNLSHKSQNFSLSFLPLHRLSPPFATFDGLEVGQDITESRQDEPVTETSEKTEQEEERKVSDSNDDAGRLYIGNLPYSITNSQLAELFGEAGSVVSVEIVYDRVTGRSRGFAFVTMATVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKVRNNYRGFVDSPHKIYCGNLGWGVNSQGLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDFMTGVEVQGRPLRLNLAEARAASSPPVLEDNAGINVESSELVSSART 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02569 317 SUPERFAMILY RNA-binding domain, RBD 208 291 IPR035979 GO:0003676
Vian2g02569 317 SUPERFAMILY RNA-binding domain, RBD 101 185 IPR035979 GO:0003676
Vian2g02569 317 PANTHER OS02G0815200 PROTEIN 35 291 - -
Vian2g02569 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Vian2g02569 317 CDD RRM2_NsCP33_like 212 287 - -
Vian2g02569 317 MobiDBLite consensus disorder prediction 77 105 - -
Vian2g02569 317 Gene3D - 197 295 IPR012677 -
Vian2g02569 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Vian2g02569 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Vian2g02569 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Vian2g02569 317 Gene3D - 70 191 IPR012677 -
Vian2g02569 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Vian2g02569 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Vian2g02569 317 CDD RRM1_PSRP2_like 109 188 - -
Vian2g02569 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02569 Vian-Chr2 46380641 46384298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02569 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 5.79e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02569 - - gmx:100814852 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02569 2 46380641 46384298 Vian3g02236 3 33793876 33796920 PCT