Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02567 ATGAACGACTTGTTATCGAGTTTGTTCTCAAAGGGAAAGCAGCAGCAACAACAAGAAGGGCAGCACGTGATTGAAATAACACAAAGTTGCATGAACTTGGACAAGTTCTTCGAAGAAGTGGAATCGGTGAAGGAAGAACTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTCACAGCCCCAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTCGCTCTTGCTCTCACCAAAGCCAAGCTCGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGGCCGACTGCGGACCCGGTTCGTACTCCCACCGGACCCGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTTAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGATCCTGACACCATTGATCTCCTAATCTCTACGGGTGAGAGTGAAAGTTTCTTACAGAAAGCCATCCAGCAGCAAGGGCGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTGAAAGAGATAGAGAGAAGTCTACACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTTCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGCGCTTGCAAATTCCTCCGTCATCAAAGGTGTGCATCATTTGCAGGTTGTGAAGAATCATCAGAAAAACACCCGTAACTTGACCTGCTTTGCCATACTCCTCTTCATTATCGTTTTGGTCATAGTTCTCCCCATTGTTTTCAGAAGTTGA 894 0.5045 MNDLLSSLFSKGKQQQQQEGQHVIEITQSCMNLDKFFEEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLADCGPGSYSHRTRTALVGALTKNLKQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDPDTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLVQHQGEHLDDIESHMALANSSVIKGVHHLQVVKNHQKNTRNLTCFAILLFIIVLVIVLPIVFRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02567 297 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Vian2g02567 297 FunFam Syntaxin 132 196 295 - -
Vian2g02567 297 Gene3D - 192 296 - -
Vian2g02567 297 SMART tSNARE_6 198 265 IPR000727 -
Vian2g02567 297 CDD SNARE_syntaxin1-like 202 263 - -
Vian2g02567 297 Pfam SNARE domain 241 291 IPR000727 -
Vian2g02567 297 SMART SynN_4 28 154 IPR006011 GO:0016020
Vian2g02567 297 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vian2g02567 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Vian2g02567 297 Gene3D - 32 160 - -
Vian2g02567 297 CDD SynN 33 190 IPR006011 GO:0016020
Vian2g02567 297 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian2g02567 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Vian2g02567 297 Coils Coil 33 60 - -
Vian2g02567 297 PANTHER SYNTAXIN 25 286 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02567 Vian-Chr2 46367020 46368667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02567 31 277 SNARE and Associated Proteins AT3G11820 63.563 1.32e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02567 K08486 - gmx:100790221 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02567 2 46367020 46368667 Vian3g02611 3 40559190 40560427 PCT