Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian2g02566 | ATGCACGACTTGTTGTCCACCACCTCCTCCTGCCGCAGCAACCGACTTCCGCCATCGTCGGCTCACAGTGTCATCGAGATGGCAGGCTGCGACGACGACGATGGAGCAACGAGCCTGGCCACGTACTTCGGCAACGTGGAAGCAATAACGGAAGAGCTGAATGAGGTGGAGCGGTTGAAGCAGAATCTGAAGAGGTCTCACGAACAAGGCAAGACCCTTCACAATGGTAAAGCCGTGAAGGACCTTCGCTTCGCCATGGAAGCTGACGTGGCACTCGCTCTGGAGACCGCGAAGGTCATCAGGTTCAAGTTGGAGACGCTTGAACGAGCCAACGCCGACCACCGGAGCCTCCCTGGTTGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCCTTGGTGTTCTCCCTGAGGAAGAAGCTGAAGGACTCCTTGGACGGCTTCAATAAACTCCGTGACCAGATAAATGCAGAACACCGTGAGACCGTCCAGCGCCAATATTTCACCGTGACGGGCAAAAATCCCGACGACGAAACCCTCGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTAGTAGAAAGAGCGATTGAGGAGGGTAGAGGAAGAGTTGAGGAGAGTATTAATGAAATAAAAGAGAGGAATAATGGGATGAAAGAGTTAGAGAGGAATCTGAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGATTCAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCAGGTCGCAAGAACAAACTCCTTCGTCAGGAATGGGACTCAGAATCTGGAAACTGCAAGGAAGGAGCAAAAAAAACACCGTAAATGGGGCTACTGTGCTATTATCCTTCTTCTGGCAATTGTGTTGTTCGTCGTGCTCTTTTTTGTCAGACCATGGCGAAAGTAA | 918 | 0.5185 | MHDLLSTTSSCRSNRLPPSSAHSVIEMAGCDDDDGATSLATYFGNVEAITEELNEVERLKQNLKRSHEQGKTLHNGKAVKDLRFAMEADVALALETAKVIRFKLETLERANADHRSLPGCGPGSSSDRSRTSLVFSLRKKLKDSLDGFNKLRDQINAEHRETVQRQYFTVTGKNPDDETLDLLISSGESENLVERAIEEGRGRVEESINEIKERNNGMKELERNLKELHQVFLDMAVLIQSQGEQLDDIESQVARTNSFVRNGTQNLETARKEQKKHRKWGYCAIILLLAIVLFVVLFFVRPWRK | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian2g02566 | 305 | FunFam | Syntaxin 132 | 201 | 301 | - | - | |
| Vian2g02566 | 305 | Gene3D | - | 202 | 301 | - | - | |
| Vian2g02566 | 305 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 36 | 166 | - | - | |
| Vian2g02566 | 305 | Pfam | Syntaxin | 42 | 243 | IPR006011 | GO:0016020 | |
| Vian2g02566 | 305 | Coils | Coil | 46 | 69 | - | - | |
| Vian2g02566 | 305 | PANTHER | SYNTAXIN | 52 | 289 | IPR045242 | - | |
| Vian2g02566 | 305 | SUPERFAMILY | t-snare proteins | 41 | 263 | IPR010989 | GO:0016020|GO:0016192 | |
| Vian2g02566 | 305 | CDD | SynN | 39 | 190 | IPR006011 | GO:0016020 | |
| Vian2g02566 | 305 | SMART | tSNARE_6 | 203 | 270 | IPR000727 | - | |
| Vian2g02566 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 214 | 253 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Vian2g02566 | 305 | CDD | SNARE_syntaxin1-like | 208 | 269 | - | - | |
| Vian2g02566 | 305 | Gene3D | - | 39 | 166 | - | - | |
| Vian2g02566 | 305 | SMART | SynN_4 | 34 | 160 | IPR006011 | GO:0016020 | |
| Vian2g02566 | 305 | Coils | Coil | 204 | 231 | - | - | |
| Vian2g02566 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 208 | 270 | IPR000727 | - | |
| Vian2g02566 | 305 | Pfam | SNARE domain | 244 | 296 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian2g02566 | Vian-Chr2 | 46360392 | 46361309 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian2g02566 | 27 | 303 | SNARE and Associated Proteins | AT3G11820 | 59.712 | 4.44e-110 | 320 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian2g02566 | K08486 | - | tcc:18598421 | 355.525 |