Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02562 ATGGACAACGAGATCGATGTTCCTTCGTTCTTCGTCTGCCCCATTTCCTTAGAAATCATGAAGGATCCGGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTTTCCAAGAAAAATACCACATGCCCCGTCACCAAACAACCCTTGATGGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATCCAAGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCAAAACCTCCCGTTAACAGGACACAGATTACCAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCGTATGCCTACGAAGACTCAAATCCATTGCTTCAGGAAGCGAGACAAATAAGCGATGCATGGAGGCTGCGGGTGCTGTTGAGTTCCTCGCATCCATTGTAATGAACAACAACAGCAACAGCAACGATTCTTCAAATGGGGCTGACCCAAATGATGGATCTGGATTCGAGTTGAAAACAACTGCAAGCGATGAAGCATTGAGCCTGCTTCACACGCTTGATTTAACTGAACAAGGGTTGAAGACTCTTCTTGGCTTCAGAAACGGAGATTTTATTGACTCTTTGACGAGAGTCATGCAGAAAGGGTTCTTTGAATCACGCGCTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTGGCTGATCCAGTGCAACTGTTGCATCTAAGACAAGAAATTTTCGTGGAACTAGTACAAGTCTTGAGGGATCAGATTTCAACGAAGACATCAAAGGATATCCTTCAAACCTTAATCCAATTCTCTCCTTGGGGGAGGAACAGGGTCAAGGCTGTGGAAGCAGGAGCAGTGCCTGTTTTGATAGAGCTTCTTCTGGATTGCAAGGATAGAAAGCCTTGCGAGATGATGCTGGTGCTGTTGGAGATACTATGCCAGTGTGCGGAGGGAAGAGCAGAACTATTGAGTCATGGAGCAGGTCTTGCCATTGTTTCAAAGAAGATTCTAAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTTTCTGTCTCCAAGTTCTCTGCGACTCCACACGTTGTTCAAGAGATGCTGAAACTGGGTGTGGCAGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGCGGAAACAAGGCCAAGGAAAAGGCAAGAGAGATACTCAAGTTGCATGCTCGGGCGTGGAAGAATACTCCATGCATACCCAACAATTTGCTTTCTTCATACCCGGCTTATGCGTGA 1266 0.4692 MDNEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPVTKQPLMDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNRTQITKLLKDASHSPLVCLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNSNSNDSSNGADPNDGSGFELKTTASDEALSLLHTLDLTEQGLKTLLGFRNGDFIDSLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLRQEIFVELVQVLRDQISTKTSKDILQTLIQFSPWGRNRVKAVEAGAVPVLIELLLDCKDRKPCEMMLVLLEILCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLSVSKFSATPHVVQEMLKLGVAAKLCLVLQVDSGNKAKEKAREILKLHARAWKNTPCIPNNLLSSYPAYA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02562 421 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Vian2g02562 421 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Vian2g02562 421 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Vian2g02562 421 SUPERFAMILY RING/U-box 4 83 - -
Vian2g02562 421 CDD RING-Ubox_PUB 8 58 IPR045210 -
Vian2g02562 421 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Vian2g02562 421 Gene3D - 98 406 IPR011989 -
Vian2g02562 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Vian2g02562 421 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Vian2g02562 421 SUPERFAMILY ARM repeat 113 333 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02562 Vian-Chr2 46309794 46311059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02562 1 419 U-box Gene Family AT3G52450 57.727 7.62e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02562 - - gmx:100811258 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02562 2 46309794 46311059 Vian2g02562 2 46309794 46311059 ECH
Vian2g02562 2 46309794 46311059 Vian3g02617 3 40673373 40674888 PCT
Vian3g02616 3 40647561 40648796 Vian2g02562 2 46309794 46311059 PCT