Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02560 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCAGGCTACATCCACTACTCCGACGCACCGTCACAGCCCCCGCCCTCACACGCTGCGGGAAATCTCGTGTTTCTCAACCCCGCCGCAGTTGCCGGCGCGAACAGCAACGGCTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAGGACCTCAACCACCACTCCATGCACGGGCACCACGATGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCACTGGAACGCATTAGACCCGGCTTCGGCGGCGCGTGATACCCCACGCGCGCAGCAGGGCTTGTCTCTGGGGCTGGGGTCGTTCCGAGAGGGTCAGGCCCCGGGCATGTCCGGCGACGACTTGCGCGTGTCAGGGGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAATGGAGCATCGGGCATTCAGAGCGTTTTCCTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTGGAAGAGGTTGTGAATGTTAACAATGGGATTGGCACCGAGTTGGGTAAAAAGAGTGGGGGACAGACGAAGGTGATTGGAGAATCATCCGCGGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAACGTAACTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTGATTGCCATGCTTGATGAGAAAGATTATGAAGGGCTGATAGTGGTGGATTGCATGGTTGTGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTGTCATCATTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGAACATACACGGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATTGCAGGGCAGGTTCGAGCTGCTAATAAGAGTTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTGAGGCAACAACGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGGGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGACTCGGACAAACACATGTTGGCAAAGCAAACAGGGCTAACAAGGAGCCAGGTCTCAAATTGGTTTATAAATGCTCGGGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAAGAAATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGGAGATTCTTCAACGAAAATGGCAGCTCCAGCAGAGAAAGGTCCTTCGAATGAAACCGAGGCTAAAAGTTTCAGTTCCAAACAAGAAGTTTCAAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACGTCACCACTTGGTGGGAGTGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCTTCAGAGCTGGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAGCAACTCTCAATGAAATTTGGTGACGAAAGGCAAGGCAGAAACGAATCCTCTTTCATGGGAAACCAAACAAACTTCATCGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCTCCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGATTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACAATTCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTGA 2082 0.4995 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAVAGANSNGSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHGHHDVSALHGFLPRMQYNHWNALDPASAARDTPRAQQGLSLGLGSFREGQAPGMSGDDLRVSGGSPSSASGVTNNGASGIQSVFLSSKYLKAAHELLEEVVNVNNGIGTELGKKSGGQTKVIGESSAAGSGDGSVGGEGNGKRNSELSTAERQEIQMKKAKLIAMLDEKDYEGLIVVDCMVVVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNGDSSTKMAAPAEKGPSNETEAKSFSSKQEVSKSQNTAMVSVSRPSTSPLGGSVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINNSSPHSSAAYESISMQNPKRFAAQLLPDFVT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02560 693 MobiDBLite consensus disorder prediction 449 518 - -
Vian2g02560 693 SMART prehox3 173 329 IPR006563 -
Vian2g02560 693 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Vian2g02560 693 MobiDBLite consensus disorder prediction 530 558 - -
Vian2g02560 693 MobiDBLite consensus disorder prediction 481 518 - -
Vian2g02560 693 MobiDBLite consensus disorder prediction 156 170 - -
Vian2g02560 693 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 462 - -
Vian2g02560 693 MobiDBLite consensus disorder prediction 207 245 - -
Vian2g02560 693 CDD homeodomain 377 438 IPR001356 GO:0003677
Vian2g02560 693 MobiDBLite consensus disorder prediction 142 170 - -
Vian2g02560 693 FunFam BEL1-like homeodomain protein 9 380 442 - -
Vian2g02560 693 Pfam Associated with HOX 180 328 IPR006563 -
Vian2g02560 693 SMART HOX_1 377 441 IPR001356 GO:0003677
Vian2g02560 693 Gene3D - 380 459 - -
Vian2g02560 693 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Vian2g02560 693 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02560 Vian-Chr2 46282052 46284901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02560 1 692 Homeobox Transcription Factor Family AT2G35940 49.339 2.90e-172 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian2g02560 POX 4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02560 - - gmx:100810901 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02560 2 46282052 46284901 Vian2g02560 2 46282052 46284901 ECH
Vian2g02560 2 46282052 46284901 Vian3g02618 3 40685604 40687949 PCT