Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02548 ATGGCCGATAAGCAACCCCACTTGAATGGTGCTTATTATGGTCCCGCCATTCCCACAGCGGAACCACCACGCTACCGCCCTCAACGCGAAAGAGGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGTACTCATAGTTCTCGTTGGCCTGGCAATCCTCATATTCTGGCTGGTTGTTCAACCCCGCTCCTTCAAGTTCCATGTCACGGAAGCCGACCTAACCCAATTCGAGTACAACGCCAACAACAGCACCCTCGACTACAACATGGTCCTGAACTTCACCGCACGCAACCCCAACAAAAAACTGAACATCTACTACGACAAGGTGGAAGCATTGGCATTCTACGAGGATGCCAGATTCTCCAATGACGATGTGATAACGCACATGAACTCGTTCAGGCAGTACACGAAGAGCAGCAGCCCCATGAGCGCTGTTTTCTCAGGCCAGCAGGTGGTGACACTAAACAATGAACAAGTGTCTGAGTTGAACGAAGACAAGAGTGGTGGCGTTTACGAATTCTATGTGAGGCTCAACTTCAGGATTCGATACAGACTTGGGGATGTCATCTCTGGTGACTTCAAACCCAAGGCCAAATGTCATATCAAGGTTCCCTTAGCTAACAATGCCTCTCAACCTTTTCAGACCACCAAGTGCGACATCGATTACTAG 681 0.4963 MADKQPHLNGAYYGPAIPTAEPPRYRPQRERGCCCCLFGILWKILVVLIVLVGLAILIFWLVVQPRSFKFHVTEADLTQFEYNANNSTLDYNMVLNFTARNPNKKLNIYYDKVEALAFYEDARFSNDDVITHMNSFRQYTKSSSPMSAVFSGQQVVTLNNEQVSELNEDKSGGVYEFYVRLNFRIRYRLGDVISGDFKPKAKCHIKVPLANNASQPFQTTKCDIDY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02548 226 PANTHER OS05G0367900 PROTEIN 31 210 IPR044839 GO:0098542
Vian2g02548 226 Pfam Late embryogenesis abundant protein 97 198 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02548 Vian-Chr2 46149321 46150001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02548 62 214 SNARE and Associated Proteins AT1G32270 31.373 1.21e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02548 - - gmx:100807701 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02548 2 46149321 46150001 Vian3g02631 3 40838388 40839101 PCT