Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02528 ATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGACCGACCAACAACAAGCCTCAACGTGGCTCGGAAACTCTCACACTCCTCGTTTCAACCTGAATGACAACCAGGAGGAGGTGGACGAGGAGGACGAGGAGGTGATGGAGAAAGCTACTGCTGCTGGTGCTGGTGGGGAGGCGGCGGCGGAAGAGGAGGAGAAGGAAGCGATGTTCGAGAAGCCGCTGACGCCGAGCGACGTGGGAAAGCTGAACCGGTTGGTGATCCCAAAACAACACGCGGAGAAGCACTTCCCGCTGGAGTCGTCGTCATCGTCGTCGTGCGGTGACAGCGCGAAGGGCGTGTTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTGAAGGACAAACGCCTCCACGCTGGCGACGTTGTTTTCTTCCACAGACACCGTACCCATCCTCAACGCTTCTTCATCAACTCCTCCCGCCGCCAAGCCAACCCCCCCGCTCACGTTACCACCACCGCAACACCCTCCTTCTACTCTGCGCACCCTTATCCTGCGCATCAGCTCCCTTTCCCATACCAACCTCAGTCCCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGGAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAAGGATTCCCAAAACTCCACGCCACTATCCTCTTACACTCTCTCCTCAACAACAACAACAACACTTTCCCACCACCACCTCTTACACCCTCATACTACTACCCCTTTTTCTTCTTCTTCCTCCTCCTCCAACCCTCACCATCACCACATGCTACGTCAACAACCGTAA 930 0.5527 MSINHYSPEARLYWTDQQQASTWLGNSHTPRFNLNDNQEEVDEEDEEVMEKATAAGAGGEAAAEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFINSSRRQANPPAHVTTTATPSFYSAHPYPAHQLPFPYQPQSLHAPPGGGSQGQNQTTPGGNSSGGRVLRLFGVNMECQPDKDSQNSTPLSSYTLSSTTTTTLSHHHLLHPHTTTPFSSSSSSSNPHHHHMLRQQP 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02528 309 Pfam B3 DNA binding domain 72 175 IPR003340 GO:0003677
Vian2g02528 309 SUPERFAMILY DNA-binding pseudobarrel domain 69 176 IPR015300 -
Vian2g02528 309 MobiDBLite consensus disorder prediction 218 237 - -
Vian2g02528 309 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 39 261 IPR044800 GO:0003700
Vian2g02528 309 CDD B3_DNA 75 168 IPR003340 GO:0003677
Vian2g02528 309 MobiDBLite consensus disorder prediction 24 71 - -
Vian2g02528 309 SMART B3_2 72 179 IPR003340 GO:0003677
Vian2g02528 309 Gene3D - 59 188 IPR015300 -
Vian2g02528 309 MobiDBLite consensus disorder prediction 208 241 - -
Vian2g02528 309 ProSiteProfiles B3 DNA-binding domain profile. 72 181 IPR003340 GO:0003677
Vian2g02528 309 MobiDBLite consensus disorder prediction 282 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02528 Vian-Chr2 45924496 45925769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02528 65 270 RAV Transcription Factor Family AT5G06250 48.182 2.39e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vian2g02528 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02528 K09287 - gmx:100802734 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02528 2 45924496 45925769 Vian2g02528 2 45924496 45925769 ECH
Vian2g02528 2 45924496 45925769 Vian3g02229 3 33652667 33654608 PCT