Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02525 ATGTTATTCATTCCCGTTTACTCTGTGAATGTGCCATGCATCAAAAACTCTTCGTTTCCCTTATTCCCTGTCTTCAACATCGAATTGAATTCCATGGCGGCTGTGAGAAAAATAATTCAGGCCAATAAAAATAAAAATTTGTCGCCATCTCTTTTTTCTTTTCGCCGAGGAATTGCTTACAAGCTTTTTGTTGGAGGACTGTCCTTCTGCACCACACAGAAAGCACTGTCAGAGGCATTTTCCAACTACGGGCAAGTTCTTGAAGCCAAAGTTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTATGCTTCAGCAGACGAGGCTGAGAATGCCATAGCAGAGATGAAAGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATACCAACAGTAAGGGTGCGATGCCAATTGCTAGAGGACCTCCTGAACCAACACCAGAAACTTGA 480 0.4208 MLFIPVYSVNVPCIKNSSFPLFPVFNIELNSMAAVRKIIQANKNKNLSPSLFSFRRGIAYKLFVGGLSFCTTQKALSEAFSNYGQVLEAKVVTDRVSDRSKGFGFVTYASADEAENAIAEMKGKTLNGRVIFVDYAKPNTNSKGAMPIARGPPEPTPET 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02525 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Vian2g02525 159 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 56 145 - -
Vian2g02525 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
Vian2g02525 159 Gene3D - 34 145 IPR012677 -
Vian2g02525 159 SMART rrm1_1 61 134 IPR000504 GO:0003723
Vian2g02525 159 SUPERFAMILY RNA-binding domain, RBD 60 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02525 Vian-Chr2 45892283 45894048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02525 62 137 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.32e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02525 - - var:108327579 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02525 2 45892283 45894048 Vian2g02525 2 45892283 45894048 ECH