Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02518 ATGATAAAGTGCTCAAAGATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTTATTCCAGTGGTGGATATTTACGATTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGAATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGAACACAACGAGGCATTCGATTGCTGAAAATGGTGAAGAACAAGAAAAGGGTTCGATCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCACCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCACCCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAATCATGA 786 0.4478 MIKCSKMDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTTRHSIAENGEEQEKGSISTCYDYHQHQMLERSATCSPESSSSGDLDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02518 261 MobiDBLite consensus disorder prediction 211 245 - -
Vian2g02518 261 MobiDBLite consensus disorder prediction 169 196 - -
Vian2g02518 261 Pfam No apical meristem (NAM) protein 11 140 IPR003441 GO:0003677|GO:0006355
Vian2g02518 261 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Vian2g02518 261 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 208 - -
Vian2g02518 261 ProSiteProfiles NAC domain profile. 10 163 IPR003441 GO:0003677|GO:0006355
Vian2g02518 261 MobiDBLite consensus disorder prediction 211 227 - -
Vian2g02518 261 MobiDBLite consensus disorder prediction 169 190 - -
Vian2g02518 261 SUPERFAMILY NAC domain 7 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02518 Vian-Chr2 45825034 45826146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02518 13 254 NAC Transcription Factor Family AT3G44350 45.161 1.49e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g02518 NAM 5.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02518 - - pvu:PHAVU_001G192000g 464.151