Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian2g02518 | ATGATAAAGTGCTCAAAGATGGACGTTATGCCACCAGGTTATCGTTTCTACCCCACAGAAGAGGAGCTGATTTCGTTCTATCTTCATAATAAACTCGAAGGAGAAAGAGAGGACATGAATCGTGTTATTCCAGTGGTGGATATTTACGATTACAACCCCTCCCAACTCCCACAAATCTCTGGAGAGGCGAGTCTGAGAGACACGGAACAATGGTTTTTTTTCATTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACGACCACAGGGTACTGGAAAGCAACAGGGTCTCCGAATCATGTTTATTCTTCGGATAATCGAATCATAGGAATTAAAAGGACTATGGTTTTCTACAGTGGAAGAGCTCCAAATGGAGCCAAAACCGATTGGAAGATGAACGAGTATACCGCCATCAAAGGTGAACCATCACAGTTGCAGTTAAGGAAGGAATTCAGTTTATGCAGAGTGTACAAAAAATCCAAGTGTTTGCGTGCATTTGATAGAAGACCACCACCAAGGAGGAACACAACGAGGCATTCGATTGCTGAAAATGGTGAAGAACAAGAAAAGGGTTCGATCTCAACGTGTTATGATTATCATCAGCATCAAATGTTGGAGAGAAGTGCAACATGTTCACCGGAGAGTTCTTCCTCCGGAGACCTTGACCATGACCAACCCACCCTGCACGGTGAGGGAGGAACCCAAATGGATGTCGACAACGACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCTTGGGATCGGAATCATGA | 786 | 0.4478 | MIKCSKMDVMPPGYRFYPTEEELISFYLHNKLEGEREDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGAKTDWKMNEYTAIKGEPSQLQLRKEFSLCRVYKKSKCLRAFDRRPPPRRNTTRHSIAENGEEQEKGSISTCYDYHQHQMLERSATCSPESSSSGDLDHDQPTLHGEGGTQMDVDNDPFLDWEKVDLFLGSES | 261 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian2g02518 | 261 | MobiDBLite | consensus disorder prediction | 211 | 245 | - | - | |
Vian2g02518 | 261 | MobiDBLite | consensus disorder prediction | 169 | 196 | - | - | |
Vian2g02518 | 261 | Pfam | No apical meristem (NAM) protein | 11 | 140 | IPR003441 | GO:0003677|GO:0006355 | |
Vian2g02518 | 261 | Gene3D | NAC domain | 19 | 167 | IPR036093 | GO:0003677|GO:0006355 | |
Vian2g02518 | 261 | PANTHER | PROTEIN CUP-SHAPED COTYLEDON 2-RELATED | 8 | 208 | - | - | |
Vian2g02518 | 261 | ProSiteProfiles | NAC domain profile. | 10 | 163 | IPR003441 | GO:0003677|GO:0006355 | |
Vian2g02518 | 261 | MobiDBLite | consensus disorder prediction | 211 | 227 | - | - | |
Vian2g02518 | 261 | MobiDBLite | consensus disorder prediction | 169 | 190 | - | - | |
Vian2g02518 | 261 | SUPERFAMILY | NAC domain | 7 | 163 | IPR036093 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian2g02518 | Vian-Chr2 | 45825034 | 45826146 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian2g02518 | 13 | 254 | NAC Transcription Factor Family | AT3G44350 | 45.161 | 1.49e-72 | 220 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NAC | Vian2g02518 | NAM | 5.7e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian2g02518 | - | - | pvu:PHAVU_001G192000g | 464.151 |