Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02504 ATGCATGACGTGGCAGAGAGGTTTAATAGTCAAAAGTCTCGTCCGCGACTCTTTAACTTCTCTAAGAAGCATAACGTCTGGCTTTTCTCAACTGCGATTCTCCCTTCCACCTCTTTTGGCTTTGAGCACAGCCGCCGTTCCCACCTCCGTCAACCAGAAATGGACATGTCAAATCCTGCAGCCTTTGTCAATGCAGAACTACTGCACTTTTATGTTGGAAGGAGGGTAAGGGCCCTGATGCAGGTTGTGCGATCTGATGGTGGAGTCGTAATTGGAAAATCAACAGATGAGAAACAGCTAGTAGTAAAAGGATTTCCTCCTGCTCCTCTTACAACTTTTGTAGAAGTTTTTGGTATTGTTAACAGTGATAAGTCAATTGCTGCTGAGATATGGACCAATTTTGGTGATTCCATTGATATGTTCAACTACAACAAACTCTGTCAGCTTGCAAATGGAGAACTTAAATACCTGTTCCTGTGA 480 0.4333 MHDVAERFNSQKSRPRLFNFSKKHNVWLFSTAILPSTSFGFEHSRRSHLRQPEMDMSNPAAFVNAELLHFYVGRRVRALMQVVRSDGGVVIGKSTDEKQLVVKGFPPAPLTTFVEVFGIVNSDKSIAAEIWTNFGDSIDMFNYNKLCQLANGELKYLFL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02504 159 Gene3D - 56 159 IPR012340 -
Vian2g02504 159 CDD RPA3 59 151 - -
Vian2g02504 159 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 51 159 - -
Vian2g02504 159 Pfam Replication factor A protein 3 56 152 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian2g02504 159 SUPERFAMILY Nucleic acid-binding proteins 56 151 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02504 Vian-Chr2 45717114 45718855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02504 54 159 Core DNA Replication Machinery Family AT4G18590 63.208 1.12e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02504 K10740 - gmx:100306641 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02504 2 45717114 45718855 Vian2g02504 2 45717114 45718855 ECH
Vian2g02504 2 45717114 45718855 Vian3g01892 3 22139646 22150401 PCT