Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02503 ATGAAAAAAATGCCTGGGACAGGACATAAAGATGTATTGGTCAAAATTCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGACGGGGAAAATGATCAAGAGGAGACAATGGAGGAAGAAGAAGTTGAGTATGAAGAGGTAGAGGAGGAGGAAGAAGTAGAAGTGGAAGAAGAAGAAGAGGAGGTGGAGGAGGAGGAAGGGGAGGAGGAAGAAGTAGAAGAGACTAAGCCTTCAGATGTTAAAGATGAGACAGGAGTGACAGACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCCGAGGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGCGTATTTTGTCAATCTGTGGGAGAAGTTTCAGCGGTTAGGATAATGAAGGGCAAAGAATCAGGTGAAGCAAAAGGATACGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATTAAGGAGCTGAACAACACTGAACTTAAGGGAAAAAAAATAAAGTGCTCAACATCTCAAGCTAAGCACAGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAACAAAGTTGTTTCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGACCCACAGGTTTCTGGCCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAGACTTTAAACTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTGCAAACTCTCAGGTAAAAGCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGCTGGCCAAGAAAAGAGCAGATATGGTTTTGTTCACTTTGCTGAAAGATCAAGTGCCATGAAGGCATTGAAGAACACAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCATTAGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCAGCTAATCAACAGAAGTCAGCTATACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCAATAGGTGCAGGATATGGTGCTGCTGGCTTTGCGCAACCACTAATGTATGGTCCTGGACCAACCCCTCCTGGTATGACAATGATGCCGATGCTTTTACCTGATGGAAGGATTGGATATGTATTACAACAACCAGGGTTTCAACAGCATGCCCCGGTGCTGGAATCCCAACATAGGAGGAGGGGCAGCGGTAGTTCAAGTGGTGGGAAACGTAGTAATGATAATAACAGCAATAGTGGGCGTGGCCGATATCATCCCTACTAA 1470 0.4327 MKKMPGTGHKDVLVKIPESPEGNSEPEKPTDSDEQVDFDGENDQEETMEEEEVEYEEVEEEEEVEVEEEEEEVEEEEGEEEEVEETKPSDVKDETGVTDTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLSVFCQSVGEVSAVRIMKGKESGEAKGYAFVTFKTKELASKAIKELNNTELKGKKIKCSTSQAKHRLFIGNVPRNWTEENMNKVVSEIGPGVISVELLKDPQVSGRNRGFAFIEYYNNACAEYSRQKMSNSDFKLGSNAPTVSWADPRNYESSANSQVKALYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKAGQEKSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGAANQQKSAILPTYPPHLGYGMVGGAIGAGYGAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQHAPVLESQHRRRGSGSSSGGKRSNDNNSNSGRGRYHPY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02503 489 SMART rrm2_1 293 366 IPR003954 GO:0003676
Vian2g02503 489 SMART rrm2_1 119 192 IPR003954 GO:0003676
Vian2g02503 489 Gene3D - 281 387 IPR012677 -
Vian2g02503 489 MobiDBLite consensus disorder prediction 21 35 - -
Vian2g02503 489 SUPERFAMILY RNA-binding domain, RBD 199 282 IPR035979 GO:0003676
Vian2g02503 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 280 IPR000504 GO:0003723
Vian2g02503 489 Coils Coil 41 86 - -
Vian2g02503 489 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 281 390 - -
Vian2g02503 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Vian2g02503 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 266 IPR000504 GO:0003723
Vian2g02503 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Vian2g02503 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 363 IPR000504 GO:0003723
Vian2g02503 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Vian2g02503 489 CDD RRM_SF 120 192 - -
Vian2g02503 489 Gene3D - 34 198 IPR012677 -
Vian2g02503 489 MobiDBLite consensus disorder prediction 452 489 - -
Vian2g02503 489 SUPERFAMILY RNA-binding domain, RBD 115 372 IPR035979 GO:0003676
Vian2g02503 489 SMART rrm1_1 293 366 IPR000504 GO:0003723
Vian2g02503 489 SMART rrm1_1 199 276 IPR000504 GO:0003723
Vian2g02503 489 SMART rrm1_1 119 192 IPR000504 GO:0003723
Vian2g02503 489 MobiDBLite consensus disorder prediction 88 104 - -
Vian2g02503 489 Gene3D - 199 279 IPR012677 -
Vian2g02503 489 MobiDBLite consensus disorder prediction 36 87 - -
Vian2g02503 489 MobiDBLite consensus disorder prediction 461 489 - -
Vian2g02503 489 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 25 479 - -
Vian2g02503 489 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 199 279 - -
Vian2g02503 489 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02503 Vian-Chr2 45709236 45713068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02503 120 434 Eukaryotic Initiation Factors Gene Family AT4G34110 24.167 2.44e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02503 K13161 - gmx:100798476 648.277