Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02480 ATGGCCGAAGAACACCGATGCCAAGCTCCCGAGGGTCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGCAGCCCCGCCACCATGAATCTCTGTTCTAAATGCTACAGAGACATCCGACTCAAGGAAGAAGAACAAGCCAAAACCAAATCCACCATCGAAACTGCTCTGTCTTCATCCTCCGCCGCAGCAACAGCAACCGTCGCCTCCGTCACCGCTGTGGTTTCCTCGCCTGCGCCGGTTGAATCCCTCCCTCAACCGGCGGTCGTGACCGCGCCGGACGCGTGCGCACCGCTTCAGGCGAATCGGTGTGGCGCGTGTCGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGCCGGTGTGGCATCACGTTCTGTGGGACCCACAGGTACCCCGAGAAACACGCCTGTGGCTTCGATTTCAAGGCGGTTGGGAGAGAGGAGATAGCTCGGGCGAATCCGGTGATCAAAGGGGAGAAGCTACGGAGGATTTAA 492 0.5955 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSSAAATATVASVTAVVSSPAPVESLPQPAVVTAPDACAPLQANRCGACRKRVGLTGFKCRCGITFCGTHRYPEKHACGFDFKAVGREEIARANPVIKGEKLRRI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02480 163 Gene3D - 1 64 - -
Vian2g02480 163 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Vian2g02480 163 SMART AN1_Zf_4 104 141 IPR000058 GO:0008270
Vian2g02480 163 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 163 - -
Vian2g02480 163 FunFam Zinc finger AN1-type containing 6 81 159 - -
Vian2g02480 163 ProSiteProfiles Zinc finger AN1-type profile. 98 144 IPR000058 GO:0008270
Vian2g02480 163 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Vian2g02480 163 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Vian2g02480 163 Pfam AN1-like Zinc finger 104 140 IPR000058 GO:0008270
Vian2g02480 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Vian2g02480 163 SUPERFAMILY AN1-like Zinc finger 98 158 IPR035896 -
Vian2g02480 163 Gene3D - 76 159 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02480 Vian-Chr2 45484439 45484930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02480 1 163 C2H2 Transcription Factor Family AT3G52800 52.353 8.09e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02480 - - gmx:100527251 281.182