Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02474 ATGAAGGTCATCGCCGCCTATTTGCTCGCCGTCTTGGGAGGCAATGCTGCTCCTTCCGCCGATGACTTGAGGCTCATCCTTGGATCTGTTGGAGCAGACGCAAATGACGATAATATTAGTAACTTCTTGTCCGAAGTCAAGGGCAAAGACATCGCCGAACTTATCGCCGCCGGTAGGGAAAAGTTAGCTTCAGTGCCTTCCGGCGGTGGCGCTGCCGTTGCCGTGACCGCCGCTCCCGGAGGTGGCGCTTCTGCTCCGGCAGCAGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCAGATGACGATATGGGCTTCAGTCTTTTTGATTAA 342 0.5409 MKVIAAYLLAVLGGNAAPSADDLRLILGSVGADANDDNISNFLSEVKGKDIAELIAAGREKLASVPSGGGAAVAVTAAPGGGASAPAAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02474 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Vian2g02474 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vian2g02474 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Vian2g02474 113 FunFam 60S acidic ribosomal protein P2 1 59 - -
Vian2g02474 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vian2g02474 113 Gene3D - 1 59 IPR038716 -
Vian2g02474 113 MobiDBLite consensus disorder prediction 79 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02474 Vian-Chr2 45429785 45430398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02474 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.027 6.48e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02474 K02943 - gmx:100787024 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02474 2 45429785 45430398 Vian2g02474 2 45429785 45430398 ECH