Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02468 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTACCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATCTTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCTGGGTATTGGGGTAGAGGAGCGATGGATCCAGAGCCAGGGCGGTGCCGGAGAACTGACGGGAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGCGGTGGTAGTGGTGGTGGTGGTGGAACTCTAGGACTAGGTGCTTCATCTTCCATTTCTTCACCTCCGCTAGCTACTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCTTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAATGAAGATAATGTGGGTGGGGATGGCAGAGCAGGTGGGCATATGCTGAGGCATTTTTTCGATGATTGGCCAAGATCAATGCAACACTCTGACAACGTTGAAAACAATGCTGCCCCTGCCCGGATAAACTCTTCCACATGTCTTTCTATTTCTATGCCCGGAAATGCTTCCTCAGACGTCTCTTTGAAATTGTCCACTGGCCCAACAAATGAGAATGTCAATCTCCAGTCGGACCAACTGCAGTTGAATTGGGCCGGAGGATGGGCCGGAGGTAGTCAAGTGGCTTCAGTGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTGCTTCTGGATCTGAGACCAGCTTCGTTACCACCTGA 1143 0.4917 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLPATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGSGGGGGTLGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDNVGGDGRAGGHMLRHFFDDWPRSMQHSDNVENNAAPARINSSTCLSISMPGNASSDVSLKLSTGPTNENVNLQSDQLQLNWAGGWAGGSQVASVGGPLAEALRSSTSTSSPTSVLHHLPPASGSETSFVTT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02468 380 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g02468 380 MobiDBLite consensus disorder prediction 170 207 - -
Vian2g02468 380 MobiDBLite consensus disorder prediction 1 38 - -
Vian2g02468 380 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g02468 380 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vian2g02468 380 PANTHER GROWTH-REGULATING FACTOR 5 32 305 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vian2g02468 380 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Vian2g02468 380 MobiDBLite consensus disorder prediction 1 23 - -
Vian2g02468 380 Pfam WRC 142 184 IPR014977 -
Vian2g02468 380 MobiDBLite consensus disorder prediction 351 380 - -
Vian2g02468 380 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02468 Vian-Chr2 45272736 45275614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02468 1 367 GRF Transcription Factor Family AT3G52910 51.554 2.98e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vian2g02468 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02468 - - gmx:100814842 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02468 2 45272736 45275614 Vian2g02468 2 45272736 45275614 ECH