Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02460 ATGCTCATTGTGGAGTACAGAAAGGGACACTCCTCTCTTAATCTCTCGGATGGAAGTTCATCAACAACTGGTTTGCACTCCCATCTCAGAACTCCTTCTCCAGCCATCGCAATTCTAACCCCAATAAATGGCTCCCCTCAACTGCCAACTGCCATCATCCAAGTTCTTCCACCTTCACCTCAGATATCCCTTAGCCTTCACATCACCACCATGCGTTCCAGCAACGGTACCACATGTGCTGCATCAAGCACCGGAGCCTCTAACGGTAACACAGGGCGCCACCCTGTGTACCGTGGAGTGAGGCGTAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAGCCCAGAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCGGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGGAAGGATGCCGAACTCAACTTCCCTGACTCCGCCTCTTCTCTTCCCGTTCCTGCTTCATCCGCTGCTCGTGACATTCAGATGGCTGCTGCCAGTGCTGCAGCCGCCGTCGGAGCAGCTAATGATGCACTGAGTGAAGGAAGCCGAGGAGGGAATCTTTCGGTTTCAATGGCACAAGAGTTTCCAGGGGGAAACTTAAACCACTTCGTGGATGATGACTTGATCTTTGACATGCCGAATATTCTGGTCAACATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGACAATTTTTCTGCTACAGATTATGACTACATGGATGAAAATCCTAATCTCTGGGGCTTCCCTTACTAG 789 0.5057 MLIVEYRKGHSSLNLSDGSSSTTGLHSHLRTPSPAIAILTPINGSPQLPTAIIQVLPPSPQISLSLHITTMRSSNGTTCAASSTGASNGNTGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPDSASSLPVPASSAARDIQMAAASAAAAVGAANDALSEGSRGGNLSVSMAQEFPGGNLNHFVDDDLIFDMPNILVNMAEGMLLSPPRFDNFSATDYDYMDENPNLWGFPY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02460 262 MobiDBLite consensus disorder prediction 75 91 - -
Vian2g02460 262 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Vian2g02460 262 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Vian2g02460 262 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Vian2g02460 262 Gene3D AP2/ERF domain 96 154 IPR036955 GO:0003700|GO:0006355
Vian2g02460 262 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Vian2g02460 262 FunFam Ethylene-responsive transcription factor 2 95 154 - -
Vian2g02460 262 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Vian2g02460 262 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Vian2g02460 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 81 258 IPR045277 GO:0003700
Vian2g02460 262 MobiDBLite consensus disorder prediction 75 97 - -
Vian2g02460 262 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02460 Vian-Chr2 45171484 45174672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02460 85 261 AP2-EREBP Transcription Factor Family AT2G36450 62.842 3.89e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian2g02460 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02460 - - gmx:100813781 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02460 2 45171484 45174672 Vian2g02460 2 45171484 45174672 ECH
Vian2g02460 2 45171484 45174672 Vian3g02116 3 29885784 29886858 PCT
Vian3g02114 3 29834067 29841844 Vian2g02460 2 45171484 45174672 PCT